RnoINT0156984 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7250741-7251309:+
Coord C1 exon
chr3:7250741-7250856
Coord A exon
chr3:7250857-7251194
Coord C2 exon
chr3:7251195-7251309
Length
338 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGG
5' ss Score
5.98
3' ss Seq
ATTTCTGATCTGACTTGTAGGCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GGGGCGCTACTTCCACCCCTTCCTCCACCTCTCGGCTGATGTTGTTCAGTACCCCCGGGCAGCTACCTCAGAGTTTGAGTTCACTATCAACACGGCCGTTACCTGAGCCGCTGCAA
Seq A exon
GTACGGTGCCACTCAGCATCCCTTCTCCACCTCTGCCTCCGGGTGAAGCTGGGCCAGTGGTCAGGATTTCGTATGTAATGGGGAAATTGCACACACAGTGTGAGTTTCAGGAGGGCCATTTAAGCGCTCTTGATATGAGCAGACAAAGTCACTGTTGCCATGAAGCACCTTGGAGTCCAGACACTTGAAATACAACTTGTCTTGTGGTAAAGATATCACAACATGCTCCTTGTAGTTGAAACTCTGCATCAAAAGCAAACATTGCCTAGAGACCTTGTGCGGGGCTCAGTGTGTGCAGGGCTCAGTGCTCCCTTGCTGATTTCTGATCTGACTTGTAG
Seq C2 exon
GCTAGTCTTTGGAGCCCATCTGCAGTCTGTGGTATGACCACTCCTCCTACGTCTCCTGGAAATGTCCCGGCTGATTTGTCACATCCATACAGTAAAGCCTTTGGTACTACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.3=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTTCCACCCCTTCCTCC
R:
GGTAGTACCAAAGGCTTTACTGT
Band lengths:
222-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]