BtaINT0154091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95959530-95959844:+
Coord C1 exon
chrX:95959530-95959607
Coord A exon
chrX:95959608-95959732
Coord C2 exon
chrX:95959733-95959844
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ATTACCCCCACCCTGAGCAGGTA
3' ss Score
5.86
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAAAATTTCAATCTTGATCAACCAACGCGATGAAGACATTTTCCGCTACTTGACCAACCTGCAG
Seq A exon
GTCAGGCCAAAGAGATCTTTTCTGCTAGGACTGGGCAAGGGATCTGGTCCTTGGAGGTGAGGGGGGATTGGGTGGGAGGGGCCACAGTGTGGTGGGAATTCCACCATTACCCCCACCCTGAGCAG
Seq C2 exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTATACTTCCAGACAAACCCCTACTTCACAAATATGGTGATTGTCAAGGAGTTCCAGCGCAACCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783:ENSBTAT00000023648:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(13.4=100)
A:
NA
C2:
PF0095613=NAP=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCAACCACCCCAAAATT
R:
GCGGTTGCGCTGGAACTC
Band lengths:
186-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]