HsaINT0173915 @ hg19
Intron Retention
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53113727-53114048:+
Coord C1 exon
chrX:53113727-53113804
Coord A exon
chrX:53113805-53113936
Coord C2 exon
chrX:53113937-53114048
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ATCACCCCCACCTGGAGCAGGTA
3' ss Score
3.08
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGATGAAGACATTTTCCGCTACTTGACCAATCTGCAG
Seq A exon
GTCAGGCCAGAGAGACATTTTTTAGTAGGATCGGGCACGAATCTGGTTCTTGGAGGTGACGGGAGGTGGGTGGGAAGGGCCGTGGTGTGTTGGGGGGGGGACAGATTCCACCATCACCCCCACCTGGAGCAG
Seq C2 exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACTAACCCCTACTTCACAAACATGGTGATTGTCAAGGAGTTCCAGCGCAACCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-TSPYL2:NM_022117:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(13.4=100)
A:
NA
C2:
PF0095613=NAP=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCAACCACCCCAGAATT
R:
GCGGTTGCGCTGGAACTC
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)