RnoINT0157338 @ rn6
Intron Retention
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22411389-22411685:-
Coord C1 exon
chrX:22411608-22411685
Coord A exon
chrX:22411501-22411607
Coord C2 exon
chrX:22411389-22411500
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ATTACCCCCACCCTGAGCAGGTA
3' ss Score
5.86
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATCTTGATCAACCAACGCGATGAAGACATCTTCCGCTACTTGACCAATCTTCAG
Seq A exon
GTCAGGCCAAGGAAGAAAACCAAGGAATCTGGTCTTTGGAGGTGAGGGGGTGGGTGTGGAAGGGCCCTGGAAGGGATATATACCACTATTACCCCCACCCTGAGCAG
Seq C2 exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACAAACCCATACTTCACAAACATGGTGATCGTCAAGGAGTTCCAGCGCAACCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782:ENSRNOT00000084129:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(13.4=100)
A:
NA
C2:
PF0095613=NAP=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCAACCACCCCAGAATT
R:
GCGGTTGCGCTGGAACTC
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]