BtaINT0154280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12503193-12505181:+
Coord C1 exon
chr22:12503193-12503322
Coord A exon
chr22:12503323-12505023
Coord C2 exon
chr22:12505024-12505181
Length
1701 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTTTGTTTCCTGTTTCTAGGGG
3' ss Score
8.82
Exon sequences
Seq C1 exon
CCCCGGTCTCCAGGCCAGATCGTGTCTCCTCTTCTTAAGCAAGTCGCTGCCATCTTGAATCCTGTAGTCAAGGTGGCACCAGCCCTGATTGAGCCGCTGTATGTGATGGCCCAGGTCAAGTATCTCTCAG
Seq A exon
GTGAGCCAGTGAGTCCTTGTGGCTGGGGGAGCCGTGGGTGAGTGTCTGCAGGCTCCCTGCCTGGGACACTCCACACACACCCCCTCACCCTCAGTCACCAGGTGCGCCCACTGTTCCCAGCCTCCAGCACCCCGACTCCTCACCAGCAGAGGTCTCTCCCACCCTCCCTTTTGCTGATTACTTACTTGATCTGTACCAGCTGACAGTCACTGAACTCGATGATGCAACAGCACTGCTCTGATCCTAGGGGACAGCAGTACTCAGAACAAGAAAAGCTCCACCCTGGAGTTTGTGTTCTAGTAGAAGTACGTGGACATAAAGCACAGTGTTATTGTCAGGACATGACCATGTGATGGAGAAAATGAAAGCCGGGGAGAGGATATAGGGGTGGCAGTTTTTAAAAGACAGTTGGGAAGGCCCCGAGGGAAGGGGACCCTGTGCCATTAGACTCGCAGAGCCTCATGGGCCAGAACGGTCCCCATTCAGCCTCTCCTATCTCAAGGCCTGGATCCTGGAGAAAGAGGGAAGGATGGGGAGAACCCTCGGTGGGGGCCTGTTGTGCTCTCGGAAGTCTTGGCTCCCCGTGACCTTTCACCCCCATCTGCCTGAAAGTCAAGCTGATCTCTGGTGTCCAGAGGCTTCAGAATGCCATGGCACGTCTGTGTGCTCTGCACTGTATGGGTTGCACTTTCTAGAGCTCCTGGTCTTCGTCCTCTGTCCTCCCAGTGTTCATCAGAGTGCCAGGTTTACCCGCTGCTCCAAGGTCTCCTGGGTACAAGGTGAGGGCAGGCCCTCCCTCCCCTGCCAGACACACACACACAGGGATGCCGGCAGATACCAGCGCTTTAGGGACAAAGCAAGGTCTCCAGCTGCTCAGGTTGTCATGGTGACACCTTCACATTTCTGCAGCACAATTGAAGGCGCAGGGAGTTTGGGACCCAGAAGCAAGTGCTCTCTACCCACTGGGTGATGGACCCCAAGCAAGAGCTGTTGAGGGACCTGGCAGCAGAGGAAGGAGGGCCTCCCAACCAGCTCACTGTACCCTGGCCCTGAGTTGCCACTGCCTCCCATTTAGGGTCAGCCTGGCACAGGAAGGCCTCTGGGCCCCAACGTGCCAAGGCATTCAGAGCGCAGTCTCAGGAGCCCATGGCCCTGGACGTAAATACTGACTTCGTCCCTTTGGAGCTGAGTGACTTACATCACTAAAGTTCCAGTCCTGCATCTGAAAGACAGGCATGATAATACCAACTTGGTGGGGGTGGGCAGACACTAAACCAGCCTTTCTCAAGAACTTTGCCTGTGTTGGCACAGAGCGGGTGCTTCTCAAGTTGTGGCTGTCACGGTTGCTGCTATTATTAGGCTTTGTTCTGCTCTTAGGTATGGAAATTGAGACTTCAGTGTTCCCCTGAGCCTCCAGACAGAGCAGTGAAGTGACTTAGCCATCTCCCTGAGGGTACAGAAGGAAGGGAGGTGTCACACCCAGGTTTGAGTCTCCTGGCTGTTGTCTGGGTCAAGGCAAAAACTAATAGTAGTTCTAATTTTAGGAAGAGACCTTTGAGTCAAGCTGAACAGACACGGGATAAATGCCCAGCTTGGATATTTCTGGGAAACAGGACACGTAAAATTCCTTCTGCCTTTACGTGGTGGGTCCTGAGAGTGCCCAAGGATCCCTGGATGTAGGGGTTTGTTTCCTGTTTCTAG
Seq C2 exon
GGGAGTTAGAGCATGCCCAGAGCACCCTGCAGCGTTGCCTGGAGCTGGACCCCACCTCCGTGGACACCCACCTCCTCATGGCTCAGATCTACCTGGCTCAGGGCAACTTTGCCATGTGCTCCCACTCCTTGGAGCTGGGCGTCAGCCACAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(23.8=34.1)
A:
NA
C2:
PF134141=TPR_11=PD(74.6=88.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTCTCCAGGCCAGATC
R:
CTGGAAGTTGTGGCTGACGC
Band lengths:
286-1987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]