GgaINT0048243 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21143205-21143942:+
Coord C1 exon
chr7:21143205-21143334
Coord A exon
chr7:21143335-21143784
Coord C2 exon
chr7:21143785-21143942
Length
450 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CCTCTTTTTTGACTTTCTAGGGG
3' ss Score
10
Exon sequences
Seq C1 exon
CCTGCAAGTCCTGGGCAGTCTCCTTCACCACTTCTCAAGCACTGTGCTTCTGTTCTTGAAACTGTGGTAAAAACTGTGCCAGGTCTTCAACAAGCTGTTTTTTTAATTGCAAAGGTGAAATATTTATCAG
Seq A exon
GTAATACTTGTATGAATGGTTAGCTATCTAGCTCTCTAGTTTCTCTGATTTTGCTCTTCAGTTGTAAAGTATTTCTTGTCCACTGTGTTACGCTACATAGCTAAGTGAAGAATACCTGCACTAGTTCTGTGATTTATGTGAGCATATTTTAGTTCTACAGGTACATTAATGTGATATTGCATCTATTGCTTTCCAAAACAGACCAGTTATTAAATGATTTGAAGATGGGACAATGGGAAAAAGTCTTAACTTTAGCCTGGTTTTGATTTCTGTTCAGAGCTGCAATGATTAAATAATAGTAGTCCTTCATGCATGACTTTGTTCATTCAATGCTAATAGTTATTAAAAAATAAATAAAATAATCAAGCTAGTAAATAATGAATGAATGTTCTGTTTAACCTGTGCTTCTTATCAGCTACTTTTTCCACTTCCTCTTTTTTGACTTTCTAG
Seq C2 exon
GGGATATTGAAGCAGCCCACACTAATCTTCGTTACTGTCTGGAAAGGGATCCTTCTTATGCAGATGCACACTTACTGATGGCCCAGGTCTATTTGGCTCAGAACAATCCTAAACTGTGTTCTCAATCCCTGGAACTCTGCCTGAGCTACAATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(4.3=6.8)
A:
NA
C2:
PF145591=TPR_19=FE(74.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGTCCTGGGCAGTCTC
R:
TCAAAATTGTAGCTCAGGCAGAGT
Band lengths:
286-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]