RnoINT0157579 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52330708-52333070:-
Coord C1 exon
chr3:52332941-52333070
Coord A exon
chr3:52330866-52332940
Coord C2 exon
chr3:52330708-52330865
Length
2075 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
AGGCGTTGCTCTCTTACTAGGTG
3' ss Score
7.63
Exon sequences
Seq C1 exon
CCTGCAGGTCCTGGGCAGCCTCTCTCCCCAGTCCTCAGACGTTGTTCTTCAGTTCTGGAGACGATTATAAGAAGTGTACCAGGTCTTCCGCAAGCTGTCTTCCTAATGGCCAAAGTGAAGTATCTGTCAG
Seq A exon
GTGATATATCCCTTAGCACATAAAATAACACAGGAGTTTGATTGCTGTGTTGGGAATGACAGGTGTAAATAGATTCTGTACTCCTCTCCAGGGAGAACAGTCACATACAATGTATATTTTGTCTGTGAATATGTATGTTGAATCCAAAATTGAAACCAAAGTTTCAAACCTATTTTAGATTTGTTTCATACCCCATGTTCATACAAGCAACCCTAATTATTATTAATTATAATTAAATTATTAATTATTATTAATATAATTATATTGTAAATTATTATTAATTTATAATATAAATTATTATTAATCTTTCTACATCTTAAACAGTTTTCACTTTAAAACCTAATAATAAGTAAGATTATCTGTCCAAACATTAAAACTGTATTGGAGAGTGAACAGAAACATTAGTGTAGGCTGTAGATGAGCCAAAGTCATATGGTAAAGACATTGAACAGACTTAGTAATCCGAGTATCTTGCAATACCAGCCGGTAGTAGCTGGACCACTACACATGAAGGCCTTACTTAGCTACTTAACTCTTATTTTGTTAAATTTTACTTTTCACAATACATTGGTTGTGGGCTACTGTTAGTATCACCACTCGGTTTTGGGTCTGGCAGCACTGACATGCCTAGATGTATTGTTCTTACCATTCCCATCCTCTTTGGCTTTTACAACAACAAAAGATCCCAGAGCAACTGTTGGTCTTGCTGACGGTTGTTTGCCAAATGTTAACGATATGTTGAGTAAGTTACTCTGCCAGTCATTTGCCCGTTAATTCTCTACCTCTGAGGGGAGATGTATTGTGTGATGTCAGTTAGTAGGCTGAGCTCTTGTGATCCCAGAAACTGAATTTTACCATGTATTCTATTTACCAATAGAAATATTGACAACAGGTAAAGATGAAGTGTATTTAAACAGGGAATAATTTAGGACTTCTTCTTCTGCTATTCCAGAGAAGTGGGGTGGGAAGTGGGCCTTGTTATATCTACTTAAGCCAGTATTTGGAAGGCAGCATACAAGTCCATGTGCACTGAATCACAAGGAAGCTGTAGCACGTAGATGATGTGTGGGCCCAAGAGTCTTCTCCCTCTGGAACTTCACCATCCTTATCACATTAGTCCTCACCAATGTTAGGCAGATTTTTGAGATATTCAGAAACTTAGCAGATGTGTTATGAATTATTTGGTATCTCAGTCGATGCTGCATTTTAATCACTATCTCATGCTTTAGAATTTCAGAGATGTATCCTCGGCCTTTTTCCTATTTTACCCAAATCATGTAGCCCAGTTGTAGAATGTACCCTCTTTGTTAGTGTAAATAACAATGCAGCCTTCTAGGTTTATAAAGGTCTATGCTCCCACCCTGATAATAATGGATTGAACCTCTGAACCTATAAGCCAGCCCCAGTTAAATGTTGTCCTTATGAGAGTTGTCTTGGCCACGGTGTGTCTCTTCACAGCAGTGGAAACTCTAAGACGCATGTGCTGTTTCTCCAGTTGGATAAGACTCTCTCATGACAGGGCACCAAGGCAGGCACGGTGGCCAGAGCAGTCACCCGAGAGCTCACATCTTCAAGTACAAACGTGAAGCACAGAAAGTGAGCTGGAAGTGGAGTGACATTAAAACTCCCAGCACCCACCCCCAGTGATGCACTTCCTCCAGCAAGGCCACCACTTCCAAACCTCCCCAACCAGTGCCACCAGCTAGCCACCAAGAGTTCAGATGCTCAAGCCTGTGGGAGACAATTCTCATGGAAACACAGCCTTGAAACCTATTTTAACAAAAGCTTTTTAAGAGGAAAATAAAGGTAGATTCTAGTCCTGCCAGTAATAGTGGGGAGCTGCTGTCACCCTTTATATTTTCCCTGATTTGCTGTGACAAACTGTTGTCCTGACTGGCATGGGTGGGTTCTTCAAGTAGTTACAGGGACGCTAGCTAGCTGGCACAAGTTGGAATAGAGACAAGGTTCATGAACAGAGATGTTAAACAGCCAAACTGTGACTACTTGCATAGTGGGTCCTGCTGGGGGCTCCAGCTCTGAGTGCTGAAGCCTCACAGGCGTTGCTCTCTTACTAG
Seq C2 exon
GTGACACCGAGGCAGCCTACAACAACCTGCAGCACTGCCTGGAGCACAGCCCCTCTTACGCAGAGGCTCACCTCCTGATGGCGCAGGTGTACCTATCCCAAGACAAAGTCCAGCTGTGTTCTCAGTCGCTTGAACTTTGTCTGAGCTACAATTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(22.7=34.1)
A:
NA
C2:
PF134141=TPR_11=PD(75.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]