BtaINT0154307 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30466833-30471676:+
Coord C1 exon
chr2:30466833-30466962
Coord A exon
chr2:30466963-30471518
Coord C2 exon
chr2:30471519-30471676
Length
4556 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
TAACTTTGTTTCCTCACCAGGTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
CCTGCAAGTCCTGGGCAGCCTCTTTCTCCACTTCTCAGACGTTGTACCTCAATCCTGGAGACTATAGTCAGAACCGTTCCTGGTCTTCTGCAGGCTGTCTTTCTAATAGCAAAAGTGAAGTATTTGTCCG
Seq A exon
GTAAGGTGTACATTAAAAGCTTAAAATAACCTTTATATTCTGATGTTGATAAGAACAAGTATGAACAAACTAAGCACTCCTCATATATGAAGAATAGTCGCACAAAATACACATTTTATATATGCACAGTTCATTAACTTTTAACAGAATAAAATTGTACAACTCTTAACTATTTAGTTCTTTAAAAAAGATTACCATAAACTTCTGTGATTCAAATGAACTTCTGGAAAAATATAGTTCTACCACTTTAAAAAAAAGTCCATCAGATAGTACTAAAGCCAGACAGTAAAAAATTATAGTCTTTAATCTCTCCTTTGAACAGATCATAATCCATCATTATTGATTCATTGGCATAATCAAATCTGATGTTTATCAGGTTTCAGATACTTAGGAAATATATTAATTCCTATCTAGTTTCTGTGATTGGTAATTCATAGCTTTAAAAAAAATAACCTCAGTTGTTACTTTAGCGTTTTAGGACATACACATGTTTGGCAATATATATGTAAGTAGACCATCACATGGGCCATATATATATATATATATATCTTTGCTGGCTACATGCTATGCAGAGTAAATTAAGTTTGTAAAGTCCTGTAGGGCAGAAACCACCTTAAATGTATTCATTCTCATGAACAGTTACTTCCTATATATAACAGAAAGAGTTAAGAGATTGTCTTTACTAATTTTTTGGATCTTGGTTTTAACTATTTTTAAAAAAGAACCAAATTATCAGAAGAGTTTATTTCACCTCTAAAATACTCTAGTTGTAAGAAGTGAGTCTCTGATACCTTCTCCTGAGTGAGTTCTGTTGAGCCATGTGATATTTCTACTTTATTTTCAGTTAGAATGGGTGTCACATACTAGATATTCAAATAGGACTTTGAGTTCTGTTATTAATTTATTAAACACTTATTTATTTTGAATTTTTATATAAATCAGTCTCAGTATATTAATAGTAATATTTCATTGCCAAAGTCTCTAGGAATGAAGTGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCTGTATGCAATGCAGGAGACCTGGGTTTGATCCCTGAGATGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCTACTCTAGTATTCTGGCCTGGAGAATCCCATGGTCTATACAGTCCATGGGTTGCAAAAAGTGGGACATGACTGAGCAACTTTCACTTTCACTAGGAATGAAGGGTTTCCCTGGTGGCTCAGATGGTAAAGAATCTGTCAGCAATGCAGGAGACCCAGGTTCAACTCCTGTTTCAGGAAGATCCCCTGGAATAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATAGACAGAGGAGCCTGGTGGGCTACAGTCAATGGGGTGGCAAAGAGTCGGATACGACTGAGCGACTAACTCTTGCTGGGAATGAAAGTCTTGTACATTAACCCCACTGTTAAAAAGAGCAGCCTGAAATACTGTGAAGTAGTGCTGGAACATGTCTAAACAGTAGTATCTTGCTAAGCTGCCAACTGCAGTGACTTCTGGTGCAAACTACCTGGAGTTGGAGCAGACTTACGGGTTAAGGGCACAGTCTCCATCAGATGCCCCAGCTGTAGACAGCAGCCACAGGCTCAGGGGATCCCAGAGCCATATGCATGTCTGACTTGCTGGCTACAAATTTAAGGGTTCTGACGACTCCCATCAGGTTCAGTAGTTTACTTGAAAGACTCACAGAAGTCAGGAAAGCACTATAGCTAGGATTAGAGTTTTATAGCAAAAAATATCCATCTGAACTAGCAAAAGGAAGAGATGCAGAGGTTGAGGTCTGGGAGGGTCCCACGTGTGAAGCTTGCATTGTCGTTTCTTAGTGGAGTCAGGACACAACTTTCTGACACATCAACATGACAAAAATCCCTTGGACTACAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGAGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATGTGAGTCTGAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGCGATTCATGGGGTCGCAAAGAGTTGGACACGACTGAGCAACTAAACTGAACTGAACTAGAACATTAGCAGCAGGGAAGCTCACCCAGGGTTCAGTACCCAAGAGTTTTATTACATAGACAGCTCCCCTCTCCCCAGGTCAGGCTGGTATGGGTGACTTAGAGTCCCTACCCCTCTAACCACATGGTTGGGATCTCTGGCCTGGCCAGCCCTTAGTCATATTAGCATAAGTTATCAGGGCTTACCATGAATAACAAAGATACTCTTATTGCTCTGGATATTCCAAGATTTAGAGATGGTCTCCTGGGAACCAAGGCCAGCCAAATTCTTTATTACAGAAGATCCTGACAAAGGCAGAACTGCAGGACAGAAATGAAATTTCTTTCATTTTTTCCTCAAGAGAATTTGAGCTGATCTCAGATAAGAATGTGATATTGATGTGATATTTGTTTGTATGGCCTTTTTTCCCAACAACAATGACCTGTTTCTCCATTTTTAAGTAATTAGTGGCTTCTAAAGCTAACTGGCCATATTCCTTCTCTTTACCTTTAGAAAAAACAAAAAAGATCTCAGTTATTCACATAGTTCTCATTTTTTTTTTCAGGCTCTTGTTTGCAAACCCTTCTTTTGAGAAATAATCTTTCTATTTTTTAAAATATATTTATTATTTGGCTGCGTCAGGTCTTGGTTGCAGTATGCGCGATCTTCACGGAATCATGCAGAATCTTTCATTGTGGCGTGTGGGCTTAGTTGCTCCATGTCATGCAGGATCGTAGTTCCCTGACCAAGAATCAAACCTGTGTCCCCTACCTTGCAAGACAGATTCTTAACCACTGGATCACCAGGGAAGTCCCAGTAATAATCACTTTTTTTCAGCTTATCTCCATGATTCTTCTCTTTCCTACAAGAATGTGGGGGTGGTAATTTGCTTGCAAATTTATTATGCTTTATTATTTATTATTATTATTATTATTATTATTATTAAAATAATCCTTTCTTTTTTTGCCTGTAGAGTTCTGAGTGTTGGATTGCATCAGAATGAAAACTCTAATATTTATTATGCTTGATGGTTAATTGACAGATTTTGACGCTTCATTTAATAAGTTATTGTACTAACTCAGCCAAATTTTTGTTCATTAAGCCCCTGTTGTTAAGAAGAATGTTTTCTGTTTAAATGGATTCTGTTATAAGAAGGTTGAGCCTTTGGGACCGAAGGCCTGACTGTAAGCCTTATTTTGTTTGTTGAGGTGTCAGGTAAGGTCACAGAGAGTTATTGAACAGATAATAATTTAGGAGAGTTACAGAGGGCTCTGGTCTAGCTGTACCTGCTTAAGGCCAGTTTATGAGATGGCTAAATGTGAATCAGTGTGGGTTATATCACGAAACTTCTAGCACCTAGAGTCTGTGCTGGTGTTTCTCTGAAGAGCCTCTTCCTCCCTTAGCTGTCAGCCCAAAGTAGAATCCAGTATTTTGATCACTTTCATTTTGATCATTTCCTTCTGTTTTAAGACTCCCAGATGTAGTTAATATCCTATAATGGAATATAATCTGCAAAAATACTGAGTTACTACTTATACCTGAAACTAACACAGTAAATCAACTGTAAATCAGCTACAATTAAAAAAAAAGACTTCTAGATATACAATAGATGTGTTTCCAGAATATTTGAATATTTCAGTTAGTATTAAGAGGCATTTAAAGTCTGTAACTCACATTTCTAAATTTCTAGACTATATTCCTATGCTTTTTGTGTTGTCTCTTGTGCAGTAGTAAAATTTCTGGCCAAGAATGATTGCTAGACTAAATCTTTCTTGTTAATGTGGCACTATAACATTCTAGTTACTTAAATTTCTATGTTTTACATATTTTAAAGAAGTTATAAATTTAAAAACATTAGACAAGGAAAGTAAAAGTACATTTATAGGACGGTCAGTAACAGTGGTGATGGATTCTGACTTTTTTACATACTCTGATTTGCTCCTTATCACCAAGGGGATGGCCTGGCTTTGGATATATTCTTTCATGCAAACTAGAAAGAAGCGGATGGTGGCGCTAGTGTTAAAGAACCTGCCTGCCAGTGTAGGAGACATAAGAGATGGGTGTTCGATCCCTTGGTCGGAAAGATCCTCTGGAGAAGGGCATGGCAACCCAATCAAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTGCAGTCCACGAGGTCGCAGTCGGACACGACTGAGCGACTTAGTAGTAGTGGTGCAGGGGGAGTTTAAGCTGAGGACCTCCAGGTCAAACACCGGAACTGTCCATACACTGCTTTTCTCCCTCTTCGATCAGATTTCCTCTTAATCGTTTTTTTTTTTTTTTAACTTTGTTTCCTCACCAG
Seq C2 exon
GTGATATGGAAGCAGCTTATAATAACCTGCAGCATTGCCTGGAGCACAGCCCTTCCTATGCCGATGCCCATCTCCTGATGGCTCAGGTTTATTTGTCTCAGGAAAAATTCAAATTGTGTTCTCAGTCTCTTGAACTATGCCTGAGCTATGATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(21.2=31.8)
A:
NA
C2:
PF134141=TPR_11=PD(77.3=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]