BtaINT0154305 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30458868-30459449:+
Coord C1 exon
chr2:30458868-30458965
Coord A exon
chr2:30458966-30459248
Coord C2 exon
chr2:30459249-30459449
Length
283 bp
Sequences
Splice sites
5' ss Seq
GCGGTATAC
5' ss Score
3.21
3' ss Seq
GAAAACTACTTATTTTCCAGGAA
3' ss Score
7.19
Exon sequences
Seq C1 exon
GATTTATCCAGTGTCAATTAATAGAAGGGCAACTACAGGATGCAGATCAGCATCTAGAATTCCTTAGTGAAGTTCAGCAGTCTTTTGGAAAATCGGCG
Seq A exon
GTATACTATTTTATTTTATCAGGGAAGATTGTAACTACTTACAAAATATGAAATTTTAAATGTTTAAAAATTTAACAATGGGATTAGAGGAGTAATGTACTAATTTTAATATGTAGTTACATTTATTAATTTTCCACATGATGTTAAAAATCCAAGTAAACTAATATTTAAGTTTGAACAAATAGTGCCTATAAATATCTCTTCGTATACATTTGAAATCTAAGTAGAAATAAATGGCTTTATAACTGTATGGAGTAATTTATGAAAACTACTTATTTTCCAG
Seq C2 exon
GAATTAACCTATTTACATGCAGTTCTCGCTATGAGGAAAAATAAACGACAAGAAGAGGTTATTAATTTGTTAAATGATGTCCTGGACACTCATTTTTCACAGTTGGAGGACTTACCTCTTGGCATACAGTATTTTGAGAAGTTAAATCCTGATTTCTTGCTAGAAATTATTACAGAATATCTGAATTTCTGTCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(43.8=100)
A:
NA
C2:
PF145591=TPR_19=PD(13.7=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTGTCAATTAATAGAAGGGCA
R:
CTGCATTGGACAGAAATTCAGAT
Band lengths:
293-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]