GgaINT0048241 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19163997-19164744:+
Coord C1 exon
chr7:19163997-19164094
Coord A exon
chr7:19164095-19164543
Coord C2 exon
chr7:19164544-19164744
Length
449 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
3' ss Seq
TCTGTTTCTTTTTCCTGTAGGAA
3' ss Score
12.27
Exon sequences
Seq C1 exon
GAATTATTCGTTGTCAGCTAATACAAGGGCAGCTGGAAGATGCAGAACAGCAGCTGGAGTTTCTTAATGAAATCCAACAGTCCATTGGAAAATCTGGG
Seq A exon
GTAGGAGCCATCTTTGTATATTAAAATACTTTGTTTTCTATCTGAATAGTGGTCTAGCAGCTACTTCCACATTTCAGTCACTCAAGTGGAGCATCCTAAATTTCAGTGTTCACTCCCTATCGACGTAAGTTCTTAACTTAGCAACACAGTACTGAGTGCTTACCAAGCATTGTCTCTGAAAATAAGTTGAAATGTTAGGAAGGGAAGGGTATTAATTTTTGCAGGATTTTTTGGTCAGAAGAGCTTAGAGCTGCTTGCACAAATTAAAAGAATGCACTAACGAAGGAATGCAGTGATCATTGGTGTCATTTGCAGCGAACATACTGAAGGTGTTGCAGTATCTCTACACAAACAAAGAAATGGCTAACGCTGATGATTAAGTAGTTTTGTATAAATAACAGGTGAATGTATCTGGAATACTTAAAATGTTCTGTTTCTTTTTCCTGTAG
Seq C2 exon
GAATTATCTTTCTTGCGTGCGGTCCTTGCTATGAAGAAGCATAAGAGACAAGAAGAAGTGATTGCCTTGCTGAATGATGTTCTGGATACCCACTTCTCAGCTTTGCATGGTTTTCCTCTTGGTGTGGAGTATTTTGAAAAACTGAATCCTGATTTCCTGCTAGAAATTATTAGGGAATATCTTAATTTTTGCCCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(48.3=84.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTTGTCAGCTAATACAAGGGC
R:
CTCTGCTGGGCAAAAATTAAGA
Band lengths:
294-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]