BtaINT0154308 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30471519-30473863:+
Coord C1 exon
chr2:30471519-30471676
Coord A exon
chr2:30471677-30473638
Coord C2 exon
chr2:30473639-30473863
Length
1962 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTGAATATTATTTTTTCAGGTG
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTGATATGGAAGCAGCTTATAATAACCTGCAGCATTGCCTGGAGCACAGCCCTTCCTATGCCGATGCCCATCTCCTGATGGCTCAGGTTTATTTGTCTCAGGAAAAATTCAAATTGTGTTCTCAGTCTCTTGAACTATGCCTGAGCTATGATTTTAAG
Seq A exon
GTAAGTGTTCCAGACTCAAATGGATAAGTCATATCGCTGTCCTTAAACCTTTAGCAAATGTTTACATGTTCAACTATTTTGTATTTTAGCCTGTAACATTTTGCTAATAAATGCATTTTTTTAGTGGAAAATGTTTTGAACTTATTAGCAGTAGGAGAAAAAAATGGAGGCACCTGTGGTTTAGTTTAACAAAACTATATGGACTTGGCAACAAAAGACCTGGAATTAGCGTCTGGTCTTCCTACCTCTTGCTCTCTGAACCTGTTTTCTTTTCCATAAAACTTATAATACTCTACAATTTTAATGAACATTAAATGTACTGTGAATATATATAAAGATAGTTGTAAACTATAGAGCATCGTTGTTGTTCAGTCATTTAGTCCTGTCCTACTCTTTGCAACCCCATGAACTGCAGCACGCCAGTCTTCCCTGTCCCTCACCATCTCCCAGAGCTTGCTCAAACTCATGACCATTGAGTCGATGATGCCATCCACCCATCTCATCCTCTGTCGTCCCCTTCTCCTGCTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCTAATGAGTCGGTTGTTCTTATCAGATGGCCAAACTTTAGAGCTTCAGCATCAGTCCTTCCAATATTCAGGATTGATATCCTTTAGGATTGACTGGTTTGATTTCCTTGCAGTCCAAAGGGCTCTTGAGCGTCTTCTCCAACACCACAGTTTGAAAGCATCAATTCTTTGGCACTCGGCCTTCTTTATGGTCCAACTCTCACATCCATACATAACTCCTGGAAAAACCATAGCTTTGACTACATGGACCTTTGTCAGCAAAGAGATGTCTCTGCTTTTTAACATAGAGCATTGTGTCAAATATTTTTATGTTTTAGGATTTTTATTGTTTGTCTCTTCCTTGGACCTTGATTTTTAATAACTTTGGATATATCATCACAGAATGCCTAGTCATTTTGAAAGTTGGTATGTGGTTTGAGGACATAAACACGCTAGATTTCTATCCAAGACGTTCAGTGTAAATATCCCATATCCCCGAGCTTTACAGAAAATCGTAGGTTCAGAGGCTTCCTGAAGTCACGTTAGGAGCTCCTCAGACTTTCTGTTTGTCTGGCAGTGTCTTTGACTCTTTGATGTGAGAACCCTTTAGTTAACTGGAGAATTCAAGTTGCAGGCTAGGTTTGCAGAAAGTAACACCTGGTTCTTAGGATAGTAGTTCTTAAGACTAGTGAAACATCATGACCCCAGTGCCAGCACTCCACCCAATAAATCAAGATCTCTGAGATCAGAGCATAAGCGTGATTGTTTACACAAGGACAACAGGTAAACTTGATGCCTAGCTCTGGCTCAGAACCCAGCCTTAGAAGGACTATAGCCATCCTAGAGGTTAGATGGCTGCCACATCACCTCATTCTGTACCATCTTCTTCTCTTGACTCCTTCCTCATCGTCTGTCGTTCTCTTATTTTTTCTGTATATGCTTTTGGTAGCCAAACTAAAGACAGAAGCTTCAATAGTACACATTTCAGAGTAGTATCAAAGGGTAAAAACCCATGTTTGGTTAACATGCCCTGAAATGTTTAATCTTTAAATTAGAAAATAAAAAGAAACTGTAGAAATCTGATAACTTATATTTTAGTACAAGAAGTCTCAGATAAAGAAATTTCATTTTCTGAAAACTAAAATAATTTCTTCGAATATACTTGCTGGCCTTCTAAACTCTGTGTGCAGTTTCTCTCCTGTCATGGTAGCAGCACCAGGGGAATGCTAGGTAGTGGCAGGTTACCTGAATTCTGATGTTTCAGTAAATGATCAGAACATGAGTAAGAGGACGGAAAAGGACCTCATGCATTCACAGGGTGGACTGTCCTCAGCATTCCTATTATCATAACATTTTATGGATTGTAAACTATGTGTTGATATTGTAAGCACTCCAAGGAAGGATTTCTGAATATTATTTTTTCAG
Seq C2 exon
GTGAGAGAATATCCTTTATATCATCTGATAAAAGCGCAGTCACAAAAGAAAATGGGAGAAATAGCAGAAGCAATTAAAACTTTGCATATGGCAATGAATTTACCAGGAATGAGGAGAATTGGATCTTCCTCAAAGTCAAAATACAGAAAAACTGAAGTTGATGCAAGCCATCGTTTATCAGTCTTTCTTGAGTTGGTAGAGGTTCACCGTTTAAATGGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(77.3=96.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTTATAATAACCTGCAGCA
R:
ACGGTGAACCTCTACCAACTCA
Band lengths:
358-2320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]