GgaINT0048244 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19167026-19168642:+
Coord C1 exon
chr7:19167026-19167183
Coord A exon
chr7:19167184-19168417
Coord C2 exon
chr7:19168418-19168642
Length
1234 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTGGTTTTTTTTCCTTTAGGTG
3' ss Score
11.59
Exon sequences
Seq C1 exon
GGGATATTGAAGCAGCCCACACTAATCTTCGTTACTGTCTGGAAAGGGATCCTTCTTATGCAGATGCACACTTACTGATGGCCCAGGTCTATTTGGCTCAGAACAATCCTAAACTGTGTTCTCAATCCCTGGAACTCTGCCTGAGCTACAATTTTGAG
Seq A exon
GTGAGTTAAACAAAAGAATTAAACCACTTTATTCATTCATACTCAGTTTATCCAAGGTTTTTTGTATGTTTTTTAATATGATGGTCTCTAAATGAGATTTTTGACTTTTCTGCTACAAGCTCTAGATGTAAATGTTAATGTGAATGTGGTATCTGAATATTTATCAAATAGCTATTTTTTTAACTAGTAAGGTTCAAAGGGCAGAACTAATTCCTTATTGCAAATACTGAAACTGTCTTAAAATACAAAAGAAGGGATAGCTTTTCCTCCAATTCTTACATAAGTACTAAAAACAACTAAAACAACGTTGTATAAACAGCATTGTTGATTGCAGAGGAACTTTGCAGTTGACTTTAAATGCCTACATAGAAGAACTTGAAGAGTGATCCAGTGTCCTTGTACTTCTTACACAGATACACAAATTACTGATGAAAATAACAAAGATGCATGAGTTCAGAAATGAAAATTCATGTTGTTTTAGCACCGTAAATGTTACGAGTTTGAAAATATGCTGTGTTGACTTGTTTTATTTGTTTACATCAGTGGAATTTTCTGATTAATACTGAGGGTACATGGTACAGCATTCCTTAGGTCTGAGTTGTGCAAGTCTCTTGGCTGTGTGTGGCTGAATAGTGGGACAAGGTAGCACTTTGCAAGTGTTCTCTCATTTTGGTTCCTTCTTCCAAATGATGCAGAAAAGCATAAGGTTAACAAACTAATCAGGAGATACCAAGTTGCTTGCAACTGTATGCATAATTACATTTCCTTTATTTAGATCTCCTTTTCCCATTAGGTCTATTTTGAGAAGGTGTGGAAATGACAGACAGGACTTAAGCCACAAAATAGTTCTATACTATTTTTAATTGGTAGCCTATTGAAGCAAATGTACTTTAATGTGAGAGATGCTAAAAATCCATTAAAATTCAGTCTAGTTTAAGATAATTCTGTCTCAAAGTCTGATATAATGAAATAGATAAGTTCTTGATTATAAAACAAAAACTAATTACTATTTTGCACACTCCCTGAAAACTAATATTTACATTATTGAAACTTAAATCAGATACATTTAGAGGTAAACAGGAACTGAGGTCAGTGCTGGGAAAAAAAGAATCTTTCAGGGAGATGGAATACTATGCATGAGGGGAAATCTGGAAATTCCTTCCTTCTCTTTGAATCTATGTGTAATATATAACACATATATATGTATATAAGTGTTTGGTTTTTTTTCCTTTAG
Seq C2 exon
GTGAGAGAGCATCCGGTTTATCACTTAATTAAGGCTCAAACCCAGAAGAAGATGGGTGAATTATCAGAAGCTATCAAGACCTTACAGATGGCGAGGAATTTGCCTGGGATGAGAAAACATACAGCTTCCTCAAAGATGAAAGGAAAAAGAATTGAAATTGATGCAAGTGATCGTGTGGCTGTCTTTCTAGAATTAGTAGAAGCTCATTGCTTGAATGGAGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(74.3=100)
A:
NA
C2:
PF145591=TPR_19=PD(18.6=17.3),PF145591=TPR_19=PU(8.5=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATTGAAGCAGCCCACA
R:
AGACAGCCACACGATCACTTG
Band lengths:
342-1576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]