BtaINT0154309 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30473639-30475159:+
Coord C1 exon
chr2:30473639-30473863
Coord A exon
chr2:30473864-30474920
Coord C2 exon
chr2:30474921-30475159
Length
1057 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTGATGTCACCCTTACAGCAC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTGAGAGAATATCCTTTATATCATCTGATAAAAGCGCAGTCACAAAAGAAAATGGGAGAAATAGCAGAAGCAATTAAAACTTTGCATATGGCAATGAATTTACCAGGAATGAGGAGAATTGGATCTTCCTCAAAGTCAAAATACAGAAAAACTGAAGTTGATGCAAGCCATCGTTTATCAGTCTTTCTTGAGTTGGTAGAGGTTCACCGTTTAAATGGAGAACAG
Seq A exon
GTAGGTCAAACTTAATTCAATTGCTCAGATCTGAACTTTGTTATCCAAGTATATATAGTCATAGGAAATGAAAATGCAAAAATTATTCCCTTGAGCAAGTGGTTAAGTTTAGAAAATTTGTTTCTCATCACTTGGCACCAGATGGAAGCAAACATGAATGCAATTCTGAGAAAAGAATTAGAATCTTGTAGAAAATGAGGAACTTATCATTTATAATCTGTTTTTTAAGTTACAGCGGTTGCTAATCAGTTACTTCGTATTTCATATCTTAGTGGAAATTAAGGTTATGTCTAGGTACTTGCCAAACCTCAAAGAATTTCTACTTCACTAACAAATTAACATAAAATGCACTTAATAAGGAGAACCAATTCCATTATAGATTGATTCTATGATGCACAATTTTTTTTTCTAGGTTTAACATTTCTTAAATCAGCTAAGTTGAGATGAATTAAAATAAATGATACTTTAGGTTCATTGAGGTACCAGTGTGGAAATTAGGAAATATTTTCGCCTGGAATATAACAAAAATGATGTCTTAGTGTAGGGAATACCTGCTATATAGTGAAGAACCATCTGTCCAGAGGGCGACTGTGGACTGGATCCCACTGAAGATGCAGTAATGAACATGACGAAGACTTTAGGCTTTGGAGTCAGGCTGCTTCCCCATTTGTTAACTCCTTAACTGTCTTGAGTCTTATTTTCCTTATTGCAAGGTGGGAGGTAATTATAGTAACTACCTTGGAGGATTGTCATAAGAAGTAATGGGTTAATACAATGCTGGATGCAAGGTAAATGTTAATTAAATTATAGTAGCAGCAACTCTTATGTAGCAACTGCTGTTGTCATAGTTATGAGAACACTTTTCAGCTAACAAATACGTCATCTTAATTTGGTCTCTGAGTTTAGTTTTAAATTTTTGTGCTTTTCAAAAATCGATCAATATATCACAAATATCAAAACTGTACTAGCACTTATTTCATTCTGTATTAGAAGAAGACCCTTATTTGTAGTGTGATATGTTATAGTTTTGAATGTTATTTTGATGTCACCCTTACAG
Seq C2 exon
CACGAGGCAGCCAAAGTTTTACAAGATGCCATCCATGAATTTTCTGGGACGTCTGAAGAGTTGCGTGTCACTATCGCTAACGCAGACCTAGCTCTGGCCCAGGGAGATGTGGAGAGGGCTTTAAGCATGCTTCGGAATGTTACAGCCGAGCAGCCGTATTTCATAGAGGCCAAGGAAAAAATGGCAGATATATATCTGAAGCACAGAAAAGAGAAAATGTTATATATCACTTGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134321=TPR_16=WD(100=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCAGTCACAAAAGAAAATGG
R:
TCGGCTGTAACATTCCGAAGC
Band lengths:
342-1399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]