GgaINT0048245 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19168418-19169569:+
Coord C1 exon
chr7:19168418-19168642
Coord A exon
chr7:19168643-19169330
Coord C2 exon
chr7:19169331-19169569
Length
688 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
TCTATTGGTTTTATTTGCAGCAT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTGAGAGAGCATCCGGTTTATCACTTAATTAAGGCTCAAACCCAGAAGAAGATGGGTGAATTATCAGAAGCTATCAAGACCTTACAGATGGCGAGGAATTTGCCTGGGATGAGAAAACATACAGCTTCCTCAAAGATGAAAGGAAAAAGAATTGAAATTGATGCAAGTGATCGTGTGGCTGTCTTTCTAGAATTAGTAGAAGCTCATTGCTTGAATGGAGAGCCG
Seq A exon
GTAAGATCACAAACATATCCAGAAACAATTTCTTCTATCTGTTAACAGGCTTGTCTAATCCTCATTAGCTTAGAATATAAAACAATCAATTTTTCTGCCTTGTGACATTTTGAAGATGTGATATCTGACTTGACATCTGATATGTGAAACTTTGCAAGAAAAAAATATGTATTTGCACGTGCTAAACTGACTCAAAATTTTTATGCAAAACTTTAATTTTGTGGAGCACATACTGGTGATGTTCACTCTCAGGCATGTAGATTAATATTTTGTTGAAAGAATGCTACTAGAAATATTTTTTGTGTCCTTCCTTTTATGTGTTAGTATCCTTACTCTCAACTGAATCTTAATATGCCTTAGGACACTGCACATGCCTAAGGATATAATGTACACACAACACTGTAGTTGGAAGGCCAGAGGTCATCCTCTTCTAAAGCGGACTAGTTAGAGCATGGTGTTGTCCAGTTGATTTTTGATCATTTTCTTGTATACATGCAACATAAGTGAAGAGGAAAATAACATTTTAAATGTTTCAGCAAAAGAAATGAATACTGTGGCTTGTTTTTGCTGCTTTTTTGTTTTGCTTCATTTTTGTATGATAGTCTCAGACATAAATTTGCTTATGATGACTTCATTTTTGTCTGTTCAACAACAAAAACTGTGTTAATTCTATTGGTTTTATTTGCAG
Seq C2 exon
CATGAGGCTGCTGTAGTACTGCAAGATGCCATTGATGAATTCTCTGGAACTCCTGAGGAACTAAGGGTCATGATTGCAAATGCAGATCTGGAAATTGCTCAAGGAGATATTGAACAAGCCTTGGCTATGCTCCGAAGTATTACACCTGAACAGCCTTACTTTGTACAAGCTAAGCTGAAGATGGCAGACATCTATCTGCAGTGCAGGAGAGATAAGAAGTCATATGCCGCCTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(18.6=17.3),PF145591=TPR_19=PU(8.5=8.0)
A:
NA
C2:
PF145591=TPR_19=PD(88.7=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAATTTGCCTGGGATGA
R:
TCTTATCTCTCCTGCACTGCA
Band lengths:
351-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]