BtaINT0154311 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30476675-30478089:+
Coord C1 exon
chr2:30476675-30476747
Coord A exon
chr2:30476748-30477978
Coord C2 exon
chr2:30477979-30478089
Length
1231 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TTTGTATCTGCCAACATTAGCCT
3' ss Score
1.13
Exon sequences
Seq C1 exon
AGAAATGGCTGAAAGGATGCCCAGTCCTCGGTCTTTTCTTCTCCTTGGTGATGCATACATGAATATTCAGGAG
Seq A exon
GTAAAGTTTTTGATACTACTGTACCTAGATTTAAAAACAAAACAAAAAACCAAAAATTCTTCTTTGTGATTCGTATAACATTCTACGGAAAGGAATTTGTTTTTTTTCCTCCATTTTTAATGAGATATAATTGACATGCAGCGTTGTAAGTTTAAGATACAACATGATGATTTAACTTATATACATCATGCAGTGATCATCACAGTAAGTTCAGTGACTATCCATCATCTTATATAGGTACAAAATTTTAAAAATAGAAAAAAATATTTGTTCTGTGATGAGACCTGTCAGAATCTACTCTTTCACAGTTTTCATATACAGGTACATATAATGTACCTCACTGTTAATTATTATGTTGTACATTACATCTGTAATACTTTTAACTGGAAGCTTGTACCTTTTAACCACCTTTATCCAGTTCCCCCCTCTCATTTTACTAATGTTTACTTAATAGTTGACGATCGTGTCATCACAATAAAAAGGAGACAACCATGACATTTAAAAAGTTGTAGTTATTTTTTTCAAACGAAGATCCAGTTATTCAGCACAGACGTTTGAAATAGAGATGATACCAGAAGTAAAGAGAGAGTCATCTTTAAAAGGGTGAAAAGAGCTACTGGCTGAGACGGAGTTTTCTTCAAAGGGAAGCAATCCTCTGACCTCTGATTCTGTCTTTTCTAATGACTGCCAGATGAAAAGCCAAGAAGCTATCTCTCAGTTCTCATATGACTACTTATGAGGACCTGGGCCTACTTAATATGGTTGGGATTGTCCTACTAAGTTATACCTGTACTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGTTTGCCATTTCCTTCTCCAGCGCATGAAAGGGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGTCTGACTCCTAGCGACCCCATGGACTGCTACCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCACTGGTGACTGTCATTTCCCTGAATTTGTTAATGTTTCTGGAATTAATATGTGCTTTATTAGTCTTGTTAAGTTTTCCAGATGTAGAGCTTAGTTATAGAAGTGTTGCCATTTAATGGGAGCCAACTAAGCTGTTATTTTATTGCTTATTTTTTGTATCTGCCAACATTAG
Seq C2 exon
CCTGAGGAAGCCATAGTAGCCTATGAGCAAGCACTAAATCACAACCCAAAGGATGGAACATTGGCAAGCAAAATTGGGAAAGCTCTTGTGAAAACTCATAACTACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(24.2=64.0)
A:
NA
C2:
PF134141=TPR_11=FE(54.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]