DreINT0169081 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50132449-50134930:-
Coord C1 exon
chr9:50134858-50134930
Coord A exon
chr9:50132560-50134857
Coord C2 exon
chr9:50132449-50132559
Length
2298 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
AATATGTTCTCTGCTGACAGCCG
3' ss Score
6.21
Exon sequences
Seq C1 exon
GGAACTGGTGGACAAAATGCCGAATCCTCACAGCTTCCTCTTACTTGGTGATGCCTACATGAACATTCAGGAG
Seq A exon
GTGGGAAATTACAGCTTCCTGCAGTTTATTCCAGTGTTTACGTTTGTCTTTCAATGTTGCAGTTAAACAAGATCTTTGCTTAGAAGCTCAAACATGTATTTCCTTACTTTTTTAAAGCTTGCTCTTGCTTGATGACCAGACAAATATTTGCTGCATAATGTAAACAGCAATCCCTTATCCTTCCAGTGGTCACAAATTACTGGAACGGGATATTTCTCAGCCCTGTTGTAGCAAGATAATGTTTTTTTTACCTTTATGACAAATTTTGACCAATATCATAATGATTATTACATTTACATTTAATCATTTGGCACAACTTTTCAGCCCGTGACCCCATTACAACAATGCCAGTGACTCACGACACCCACTATTTCCTGAAGTGGTTATTCATTCAATCATTCATTTTCTTTTCAGCTTAGTCCCTTTATTAATCCGGGCTCGACACAGCGGAATGAACTGCCAACTTATCCAGCAATTTATTTTCGCAGTGGATGCCCTTCCAGCCACAACCCATCTCTGGGAATTGAAGTTGTTATAATCATACAAAAGTCGCACACAACAGCTCACACACACCCAATAGGCCTATATAAACATGAGCGTATTGACAACACAAAAAAGTGCAACAGTGTAACAACCATATTTATTTCTCCATTTTGGTGGGCACAATTTTTAAGTTATATCACAAGTTTTTTTGGTTTAATGTTGTAGACCACCACTCGGAGATCATCCTCCACGTTCAGTCATGGCCTGTATTTATTTTAAATGTATGTGAGTGCCATAAAAGTGTCAGAAAGTTTAGGCTTGTGACAAAATTAATCTGCTGCAATGGACGCTATTGCTGTGTTGTTAAAGGGAAAATGAAGCAGTCAAGTTTACTTAATTTTGTAAATTGTTTTCCACTTTAATGAAAATATATTAAACAAACTCAACTAATGTAACCATTTAGAAGAAAAATGCATGTTTTACTATAGTTTTTAGACCTAGGGTGCTGCCATCTTGGAATGTCGCTGTGTCTGACGTCACAGGGTTGGTTCCGCTCCCTCATCTGAACAGATACAGTGGAAATAAAGGACTGAACCGGAGACTAAACATCCTTATTTAACCCAATGCGTGAAGTTGTGAGCATAGAGCTGGTGCAAAGACAAGCATCAGATGTGTGTCTAATATAAAAATATATACAGTATATTTATTCTATTTTACATTTTTTCCCTTTCAATTACCAATCATTTGACGCAATATGCTCCACTCTCTGTATTACACTGCCTGACTGCCTGTCTGGGTTTCAGTCATTCATTGGTTTCGACCAGGTTCGATGCTAATGTAATGGGGCGGGTGCTTTCACTTTTTACTACTACCGCCCCTCACCTGTTTTCGTGTTCAAAGCAAACTCGGCGTGTTTTTTTCACATGACAGGTTTTCACATCCTTCATACATGTTGAGAGATCGAGTTGATCAACTTGAAGTGAGAATATGTCTTGACATAATCCACAAAGATGTGAAAAGTCATTTATCATTTAATCATTGCATTAGTCTGAATGTAAACGTAATACTTGACTCTGATTGGTCAGTCACATAATTTCAATGAATGTTATTTCCTGATAACAACCTCTGAAACTAATAACACACTTTTAATAACATACTTTGAATAATCTCAATTACATATATATGTAATAATGTTCCGCTTGCTCTCCCCCCTTTCTGGGTGTTCGATCATGCCTTCCCCACCACAATATACTTGTATGCTTATCTGACATAGCACTGCTTTTGACTGTTTGGCCGAACAGATAATACTAGTAAGTTAGTGCTCATCCTACCATTTAATTATTTAGCCTTTGTTTTTTTTTTTTTACTGCGATTGCTAGATTTACTGTTTAATTAGATAGATTACACGAGCTGGATTCACTGGTCAGATGCGCTCCTAGCACACTGAGGACATCTGCTGGTCACAAAAGTATCTGACATGCCCCGCCCCTTTCAAGATGCTTTTTATTTGCTTTTCGTTTGATGTGCTTCATCTCAACCACTTTCACTGGCAGAGTTGTAATAAAAACCAAATGCTGTTGGCTGGTTTTCAAAAAGGGGTGGAGTTACAATGTGTCTAGCCCTGTATTCATGAATTGCAGTTGATTACATCAAATATTGAACAAAAAAGCTGCACATTTCAAAGCATTAAATGGGAACTTTAAATTATACAATGTATCTGCTATTTCTTTCAGTGAGTAAGAATCGTTTTGATTTTCATCATTACACTGATGTTTATGTATATATATAAAAAAAAAATATGTTCTCTGCTGACAG
Seq C2 exon
CCGGAGTTGGCCATTGAAGTGTATGAACAAGCCCTGAAGAAAAACCCTAAAGATGGAGCTCTGGCCAGCAAGATTGGAAAAGCACTGGTCAAAACCCACAACTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(25.0=68.0)
A:
NA
C2:
PF134141=TPR_11=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]