RnoINT0157583 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52324686-52325363:-
Coord C1 exon
chr3:52325291-52325363
Coord A exon
chr3:52324797-52325290
Coord C2 exon
chr3:52324686-52324796
Length
494 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TTGTGTCTTGACAATGTTAGCCC
3' ss Score
2.45
Exon sequences
Seq C1 exon
AGAAATTGCTGAAAGGATGCCCAGCCCCCGGTCTTTCCTGCTCCTTGGTGATGCATACATGAACATTCAAGAG
Seq A exon
GTAAAATTTCTAACTCTACAGAACTCAGATTAAAAAAACAAAATCATGGAACTCTGCAATAAGTGTAACTGTGTGTTTAAAGGAGTTTGGCTTTTTCATCATGTTTAATATTTGAGTTCTGATGGTGGCAATGAGAGGTTAGCTTCTATAATATTTTTCAAATCTTAACTTAATTCAGTGATTGTCCTATATCCAATAGAGATGGTCCTAGAAGAATGTTGGGAGTCTCCTCTAAACAGAACGATGGAGAGAGATCGCTTGACTGTTGTAATGACTGCCAAGAATGATCATTATGGGTCGAATTACAGTGATCAATATCTGGCCAATTTTCAGTCATCTATCTGGAATTGTATACTTTTATATTGTTCAATATCTACTTTCGTAAAGCAAAGTATTCCAAGTGGGGAGAGGCGTCATTGTGGAAAATGTTGCTCTTTCATGGGTTCCCTTAAGCCATTTGTTAAACTTTGTCATTTGTGTCTTGACAATGTTAG
Seq C2 exon
CCCGAGGAAGCCATAGTGGCCTATGAGCAAGCATTAAATCAGAACCCAAAAGATGGAACACTGGCGAGAAAAATTGGGAAAGCACTTGTCAAAACTCACAACTACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(24.6=64.0)
A:
NA
C2:
PF134141=TPR_11=FE(55.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATTGCTGAAAGGATGCCCA
R:
TTGAGTAGTTGTGAGTTTTGACAAGT
Band lengths:
182-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]