BtaINT0154316 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30482846-30485870:+
Coord C1 exon
chr2:30482846-30483034
Coord A exon
chr2:30483035-30485759
Coord C2 exon
chr2:30485760-30485870
Length
2725 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AACCTCGCCCTTCTCTACAGATA
3' ss Score
9.01
Exon sequences
Seq C1 exon
GCTCGAGAATTACAAGCTCGGGTGCTAAAACGTGTTCAGATCGAACAGCCAGATGCAGTTCCTGCACAGAAACATTTAGCAGCTGAAATTTGTGCAGAGATTGCAAAACATTCTGTTGCTCAGCGAAACTATGAAAAAGCAATTAAGTTTTATAGAGAAGCTCTTGTTCATTGTGAGACAGATAATAAG
Seq A exon
GTCAGTACCTTTATAAAATTTTCAGCACCTTGTAATCCAGATGTCATCTCATTTCCCCAAATGTAAATTTCTTAACAGCTTATTTATAAAGATTTGAAAAGAAATGTACTAAAAATACAAGTTAAAATATTAATATTGGTTTTATAAATACTTTAAAATACATGCTGGCTTGAATTAATAATGTTCGAGTCTAAAAATTATTATGGAACAAGTGATAAAAAGTAAATCTGTAAGCTTTTATGTTCATCTATGTTTTAATAATTACTGTAAAACGATTTCTCAATCTCAAATACCTGAATCTAGAGGATTCAATTCAGTTAACTGAATACCTATTGTGTATCAGTCGCTGTTTAGTGCTGGATATACAAAAATGGCTAGATTGAATCTCAACCTCAATTGGCACAATGTTAGAATAAATGCAAAGATAATATTAGTGTAGAAAATATATACATGGCATTTTTTGAAAATTTTAATTTTATTGGCTGTATCATTGATTTATAATGTAAGTTTCAAGTATACAGTGAAGTGATTCAGTTATACATAGATTCATTCTTTTTCAGATTCTTTTCTCACATAGGTTATCACAGACTGTCGAGTAGAGTTCCTGTTCTATACAGTGCTCGTTCGTGAAAGTCGCTCAGTCATGTCCGACTCTTTGCAACCCCATGGACGATACAGTCCATGGAATTCTCCAGGCCAGAATACTGGAGTGGGTAACCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCCAGGTCTCCCACATTGCAGGTGGATACTTTATCAGCTGAGCTACCAGGGAAACCCTGTCTTGTATACAGTAGTGTGCATATGCTAATCCCAAGGTCCTGATTTATCCCCCCACTACATTTCCCCTTTGGTAACCATAAGTTTTTTTTTGTTTTTGATATCTATAAATCTGTTTCTATTTTGTAAATAAGTTCACTTGTATCATTTTTTAAAAATTAGATTCCACATATGAATGATATCATGATTTTAGTTATTCTGAGTCCACTTAGTATGATAGTCTCTAGGTCCATCTATGTTGCTGCGAGGGGCAGTATTTCAGCTTTTTTGTGAGTAATGTTCCGTTTTAATATGTGCCACATCTTCTTTATTCCTCTGTTGATGGACATTTAGCTTGCTTCCATGTCTTGGCTGTGGTGCATAGTGCTGCTATGAACATAGGGATGAATGTGTCTTTTCTAGTTATGTGTTCTCCAGATATATGCCCAGGAATGGGATTGCTGGATCATATGATAGTTCTATTTTTTTTTTTTTTTTTAAGAAACCTCCATACTGTTCTCCATAGTGGCAGTACCAATTTACATTCCCACCAAGAGTGTAGGAGGGTTCCCTTTCTCTACACCCTCTATAGCATTTGATGTAGACTTTTTTTGGGGGGGAAGGATAATTTTTTTCACAGAATTTTGTTTTTTGTCAAACCTCAGTGTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAGTGCAGGAGACCTGATGTAGACTTTTTGATGATGGTCATTCTTGACCCAGTGTGGGGTAACACCTCACTGTAATTTTGATTTGCATTTCTCTGATGAGTAGTGACACTGAGCAGCTTTTCACCTGCTTTTTGGCCATCTGTATGTCTTCTTGGGAGAAATGTCTGTTTAGATTTTCTGCCCATCTTTCGGTTGGGTTTTTTTTTTTTTGCTTTTTTAATATTGAGCTGCGTGAGCTGTTAATTTGGGAGATTAATTTCCTCATCACATTGCTTGTAAATATTTTCTCTCATTCTATGGGTTATTATGGTTTCCTTTGCTGTGCAGAACTTTTCAGTTTCATTAGGTCCCATTTGTTAATTTTTTTTTTTCATGACCAGGAGGTGGATCCAAAAAGATACTACTGCAGTTTATGTCAAAGAGTGTTCTGTGTTTTCCTCAGAGCGTTTTATAGTGTCCAGTCTTGCATTCAGGTCTTTGATCCATACTGAGTTTATTTTTGTGTGTGGTGTTAGAGAATGTTCTAATTTCATTCTTTCACATGTTTCGTGTAGTTTCACGAACGTGTGTCTTCCTTCACGCCTCTCTCTTGACTTACCCGCCAGAAGGGAGCGGGAAATGGCAGTCAGTTCCCCACAGGAACCGTCTGTTAGTGCTGATCTCTAGGATTTTCTATTCTCAGTCTAGTAAATGGCTAAATATTTAAGTGATGTAAAACACAAGACAACCATGTTCTAGAATTTGACGTTTAAGATTGAACATTTTGAATTAACATAGCTCTTTCAGACATAAGGCAAAAATAAGTGTTTATTAAGTCACAACCAAACAGGTGCCTCGTTCAGTGATGACTAAAGTGACTGAAATCATAGTTGTAAATCTGGAGCGTGTCTGCTGTAAGCCTTTTATTGATATTTTACGAATGAGGAAACAGGTTTAGAGAGGTAAAGGGCCGTGGCCCCATCGTGGAGATGCTTGGACTAGAATCTTAGCTGCTTATTTTGGGCCTGTTCTTTTCACAATGCTTTGTCTCTACTTTTCAAGTGAGTTACAGCCCGTTTTTCCATAATTTTTCCTGTATAAGAGAAACTAGAGATGAGCAAACCTATAGCTTTACCTGCCTGTCGTGGTTGGCATTTTTATTGTACTAACTTTGGTCAGGTGACGTCTGCGCCCTAGACACTTTCCTGACTTTCTGCTCTAGACTGTTTCTGATTAACCTCGCCCTTCTCTACAG
Seq C2 exon
ATAATGCTGGAGCTGGCCCGATTATACCTGCTACAAGATGACCCTGACGCCTGCCTGCGGCACTGCGCGCTGCTTCTCCAGAGCGACCAGGACAATGAGGCCGCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134321=TPR_16=PD(8.5=9.5),PF145591=TPR_19=PU(36.8=39.7)
A:
NA
C2:
PF145591=TPR_19=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]