DreINT0169086 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50126673-50129450:-
Coord C1 exon
chr9:50129262-50129450
Coord A exon
chr9:50126784-50129261
Coord C2 exon
chr9:50126673-50126783
Length
2478 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
TGTCTTGTGTATTTGATCAGGTG
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCCAGAGACGTGCAGGCGAAGGTGCTGAAGCGTGTTCAGCTGGAGCAGCCCGACTCGGTGCCTGCACAGAAACAGCTCGCCGCAGAGATCTGTGCTGAAATCGCCAAACACTGCAGCAGCCAGAGAGGCTACGAAAGAGCCGTCAAGTTCTACAAAGAGGCGCTTGTGTACTGTGAAAACGACAGCAAG
Seq A exon
GTCGGTGCGGCTCCATCACTGAGCCCCTGTGTGTTTCTCTGCAGCTGTGTGTGTGCACTTACTGAAAACTGTCACCAGTCAGCACCTAAGAGAGCAAATTAACATCCTTTCAAATTCAAATTTTATTTGTCACATACAGCGTCATACACACACTACATACATACACTATGATATGCAGTGAAATGCTTACACAAATGCAATTTTCATTTACAAGCCAGAGATGGTTTAGCTAGACTTGAGGTGAAAGTTGATTGTTTGCTCCCACTTGTGGACTGTCCGATGGCATTTTTTTTATTTGATTTATTTTTAACAAGAGAACAGCATGTAGCAAAAGGAAAGAAAAGCAAGTAGCAACTAGACAAAAAAAGCATTTGCCAAATGCCTTTTTAAAAAGCTATTTAAATTGTGCATTTAAAATGATCTATAAATATACATTTTTACACATAAATTAAACAAACATTTATACAATCCACTTATTTATACATTTAAAAGTTATTTTTAAATGCATTGTTTTATTGCTTTATTAAAGGAGATTTAAAGACATAATTTAAACAAACACATTTAAATATGTCCTTTTATTTGTCCTTTAACTGTCAATTTAAATTGTGATTTATTTATACACATTTTAAAGCTTCAAATATTAAATTTATAATTTAATTTTTTTTTTTTTTTTTAACCGGCACTCCTGGTCGCCCATATACTTAACCACTCGTAACCTTAAAACAATAACAAAAATAATAACAATAAGAATTTAAATTGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGGTTGCTGGTTCAAACCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTATGTGTGTGGATGTTTGTGTGAATGTTTCCCAGAGATGGGTTGCGGCTAGAAGGGCATCCCCTGTGTAAAAACTTGCTGGATAAGTTGCCGGTTCATTCCGTTGTGGCGACCCCGGATTATTAAAGGGACTAAGCCGAAAAGAAAAAGAATGAATGAAGTGAAGAATTTAAATTTTGGAGAAATATGTGGATGAAGTGTCTGAATAACAATTTTGAAAACCTGGTTAGTAACTACTATACCAAACTTGGTGACCAATAAGCTGAAGACCGGGGGGGAGGGGGCGGTGAGTTAGGTATGAGGTGAGATTATGGTAGTTTTCCAGGAAAAATAAAAAAACAGGAGGGTGGCGGGAGATGGGTCTGAAATATGGGACACTCCTGGGCAAAATGGGAGTGTTGGCAGGTATGGATCTCGGACGAGAGTCAAATGATCTTTTTAGGCATATTTAGATAAACATACAACACAATACAAAACAAAACAACACAGCACATACACACAAAACAACAACATAACAGAACACCACTAATTTAATGCACACCCTCCAGTCATTTAGTACAAAAACAATTTCAACAGACTATAGAATAATAGAGAATAAGTGGTCATACAAATTAGGATTATATTTTAAATGACGATGAATGTTTTAGCGACAAAATGGGTAAAACCTAGTGACTTAGGATAATGGCAAGATTTAAATCAACAATTAATGAGCATTTTGCTGATCTTTAAATGAGTCATTTAATGTCATCAAATGATTCTTGATCTGAACATTCCTGAAAATATCACTTGACATGTAAACAATTGCTACACTAAATTATATTTTAGTAGATATCTTCTATATAAATAAATATCTGCATTGTGATGTGTTAAACAGAAATTGGGGTAAAGAAATTTAAAGTGGGGCTAATAATTTTAGACTTCAATTGTCCTTAACCCTAATGTCAGTCTAATTCATTCAAGACAAAGTTTTGACATGCAGTTACTCTCACTTGAAGTGATTCAGTAGTTAAAAGCACAGTATGTACTTTTGACCACTAGAGGGCAGATATTAAAAACAAACAAAGGCGTATTTTGGTGATGCCATGACTTGATTGTTGAGCCATGAAAGTTGTGGTTTTTGTTACATCCTCCTGGACAGCAGAAATCATGTTGATGGATGAATAAAGTATTCAACTCTTATTATCGTGGTAATATGAAGCAACTGTATAATATTGATCTTAAAAAAAAAAAAAAAATTCTGCTTTTATTTGAGTCAAAATAAGACTTTCTCTAGAGGATTATAGGAAATACTGTAAACAATTCTTTGCTCATAATTTGGGATATACTTGAATATTTTAGTATATTATATATTAGAAAATCACAGGAGGGCTAATAGTTTTGACTTCAACTGTACATATAGTGCATGCTTTACTGCATAAAATACAAACGTAAAAGAGTTTTAGAGTGTGTATTCAGCACACGTGTTCATGTTCCTGTGAAAGTAACTGTGTGTGTCTTGTGTATTTGATCAG
Seq C2 exon
GTGATGCTGGAACTGGCTCAGCTTTACCTCACTCTGGATGATGTGGAGGCCTGTCAGCAGCAGTGCAGTGCCATTCTGAAAAACGACCCGGTCAATGAGTCCGCCACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(9.1=10.9),PF131761=TPR_7=PU(91.7=51.6),PF134321=TPR_16=PU(0.1=0.0)
A:
NA
C2:
PF134141=TPR_11=PD(42.6=78.4),PF134321=TPR_16=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]