Special

BtaINT0155287 @ bosTau6

Intron Retention

Gene
Description
Bos taurus tubulin, beta 4A class IVa (TUBB4A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034697]
Coordinates
chr7:19206050-19206818:+
Coord C1 exon
chr7:19206050-19206191
Coord A exon
chr7:19206192-19206709
Coord C2 exon
chr7:19206710-19206818
Length
518 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TTCCACCTCCCCCTTTCTAGTTT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GTGCTTCGCCGCCGCCTTCGCCGCCGCAGTTCGCAGCATCAGCACCAGCGCCAGCGCCGCCGAGTCCAGCATCAGCGCCACAGCCATGCGGGAGATTGTGCACCTGCAGGCCGGCCAGTGCGGCAACCAGATCGGAGCCAAG
Seq A exon
GTGCGCGGGGGGACCGGGCCCTGGAAGGACGCCGAGCGCAGTCCACTGAGCCCCGCAGCACTCCTCCACTGTGGGGGGCCAGGTCCCCCAGGAAGCCAGCACCCCAGGGTCGGTGGGGGAGGGGCGCGAAGGGCAGGGCCAAGCTGGGAAACAAAGAACTGATGGGGGTGGGGCCCGGCCTTCTGTCCGCTCGCCACAGCTGGCTTCACAGCTGGCCCGCTGGCCCCTCCACAGGCACAAAGAGACCCCGCCCCTGCCCACGGCAGCAGCCAGGGAAAGCTGCCCCCACCGGCCGTCTTGGCTGGGGTGTTGAATCTGCTTCACCCCGCCCCCACCTCTCCCTACTTGCTGCCTCATCCTCGCCTGCCCACCCTGCGACCCGGTCCCCCACTCACCTTGCTGGGGGACAGGTGGCAGCCAGGGAGGTGATTGGGGATCCTGAGCTCAGGAGACGGAGGTGGGGGAAGGCCTGGCCATTGACTCCCCCTTCTTGGTCCTTTCCACCTCCCCCTTTCTAG
Seq C2 exon
TTTTGGGAGGTAATCAGTGATGAGCATGGCATTGATCCCACGGGCACATACCACGGGGACAGTGACCTCCAGCTGGAGAGAATCAACGTATACTACAATGAGGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021013:ENSBTAT00000014560:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):

C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCAGCATCAGCACCAG
R:
CAGTGGCCTCATTGTAGTATACGT
Band lengths:
222-740
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]