BtaINT0155873 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106158201-106159065:-
Coord C1 exon
chr11:106158925-106159065
Coord A exon
chr11:106158387-106158924
Coord C2 exon
chr11:106158201-106158386
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
TGTCTCCCCTGCTCCCCCAGGAA
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGAGCTCGAGCCCCTGCTGCAGCCACACGTGGCTGTGAAGAAGGTCCCCTGTGTGGATGAGCACGGGAACCCAGTAAAGCCGCTGCAGCCGAACGGGATCAAGATGGAGAAGTTCGTGTTTGACGTGCTCCCGTTTGCCAA
Seq A exon
GTCAGTGCAGAAGCTGTCTTTGTTCCTGCCCCCACCCCCATCTTGTGGTAGTTCTGAGGCCCAACAGGCAGGGAAGTGGAGGCCATGCCCCTTTGCAGGGGGGCTGGGGGGCTGCAGGAGGGTTTTGGTGCAAGAAGCCCAGAGGAAGCAGTCCCTGGGGTGGGAGCAGAGGGCGCATCTAGAGCGGTCGGAGCCCTTGGGGTTGTGGACTTGCGGGGACACCTGTGCTTCCTCTTGAGTCCCCCTCTGCCCTGGCCCGGGGCCCTGAAGCTGTTTCCAGGGGAAGTAGCTGGAGCTGCCAGGGTAGGTGGCCCCCACCTGGGGTCCCAGGTCCTGGGGGTCAGGCTGGTGAGAAGGGGAGGGAAGAGAGGACCAAAGATAGCTCCGGAGTCTTGGAACAAAGACTCCCGCGTGCTCGGGGGCCCAGAGAACAGACGCCCACGCAGTCTGTGTCGCTCCGGCCTGGCTTTCAGCTGCCGGGGCCCAGGGCGTCTGGGCCAGCACGTCGGGTCTGCAGCTGTCTCCCCTGCTCCCCCAG
Seq C2 exon
GAACTTCATGGCCTTCCAAGTGCTGCGGGAGGAGGAGTTCTCCCCACTCAAGAACGCTGACTCAGCCGACAGGGACAACCCCTCCACGTCCCGGCGGGCCCTGCTTGCCCAGCACTGCCGGTGGGCCCTGCGGGCAGGCGCCCGCTTCCTGGACGTGCACGGGGCCCAGCTCCCCGAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054:ENSBTAT00000065653:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(12.5=100)
A:
NA
C2:
PF0170413=UDPGP=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGCCACACGTG
R:
CCGTGCACGTCCAGGAAG
Band lengths:
290-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development