GgaINT0125121 @ galGal4
Intron Retention
Gene
ENSGALG00000009090 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr17:357468-359212:-
Coord C1 exon
chr17:359072-359212
Coord A exon
chr17:357654-359071
Coord C2 exon
chr17:357468-357653
Length
1418 bp
Sequences
Splice sites
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
3' ss Seq
TTTCTCCCCTTTGCTGATAGGAA
3' ss Score
8.69
Exon sequences
Seq C1 exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTGGTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
Seq A exon
GTTAGTGGCAGAAGTGCTCTTTTTTTCCCCCTTTTCAATGTTTGTTTGAATGACTGTAAGTTGTAGAAGACCTTGACAGATTGTGTGTAGTTTGTGTTAGAGAGACTGTTGGATCTGCCACGCTGCAGTATGGCAGTAGCTCTGCAGGCACTGACAGTGCGTTCACTGAGTCTTTGTGTGCAGAGCTGGCTTGCTCTGACTGCTCTTTGGGAAGTGTTCATTTTGCTGAGGATGATTTGGTTGGCCCTCCCTCTGCTGGCCCTATGGAAGAAAGAAGGCAGGAAACAGAAAGCATAGTGGGCATTTGATACAAGAGCATGTTGGAATGTTCAGATTCTCAGAAATTGGGCCTTTCGTAATTGTGGCTTCCATGACAACTGCAGCTTTTGTTGGGTTTGAGGTGCATGAGGAGCTGAGACCGGTTCACACCCTTTGTGTTCAGAGAACAGGCTGCTGGAGCCCCCTGGGGATAGGTTGCTGTCAGAGCTGTAAACGTTGCTTTGCCAAGCTCTAAGGCACAGCAGAGATAGCTGTATCAAAGTACTCCGTGTTCAGTGAATGTGGACTTTTAATAATTTAGGAATTTACCATAAGTTTATGAATCCTCTTTTCCAAAGCCTAGAATTCAGCAACAAAGATTCTGCTCTAGGCTGAAATTAACAACAACAACAAAGAGACCTGAGGGAAACTGAAATATCTCGTTTGGAGACAGCGTTTTTGTTTTAAGAAGATTTACTGTAGGTGAAGGAAATGAGGTTTCCCTGACTGATGCAATCTGTAAGGAAATATACTTGAAAGCAAAGTCAGTCTGGTGGAAATATTGCAGAGCTATGGATTTTGAAACAACTGCAAGCAGTTTCTTCATGTTTTTTTTTTTTTTTTTCCATTTCATGTACTTTTTTGATAATATGGAAAAGATTGCTTGGCAGATGCTCTTCATGTGTGAAGTACAGAAACATGGAGGCGCTGCTGTGGTTTTATTTGCGTTCCCTTTTCTGGTAAACTTGTGTACATACATCTGACTGTATGTCCTCCCGTATTGCTTACTCATACCTGGAAACTGCTGTCCTGAGTCACTCCTTGCCCTCAGGCTCCCACGCTAAGCGACTGTTTCTTTGAGCCAGGGGTGCAGTGCTCTGCTATGAGTAGCACAGCGCAGCCATGTATCTGAGCTTTAGGCATTGCACCTCATTCTGTTTTTCTGTCATACAACCCTGGTTCTTATTCACTCCTCAGATGGGAGGTGGACTTTCCTTAGCTTTCCTTAGCTTGACTCTGCCCCAGGCTGTGTACATCACTGCTCTTTAAAATATATATGAGCACTTCCCCATGAAAGTTGGTTTTGCATCTTTTTTGTGAACAAAGCTGATGGCTAGCTTTGTTTTTCATTATTCTTGTTTTCTCCCCTTTGCTGATAG
Seq C2 exon
GAATTTTGTGGCATTTGAAGTTTTGAGAGAAGAGGAATTCTCGCCATTGAAAAATGCAGACACAGCTGAGACAGACAACCCTACCACTGCTCGGCAGTCCCTCCTGGCCCAGCACTACCGCTGGGCTCTCAAGGCTGGGGCCAGATTTCTGGATGAAGATGGCTGCAGGATACCAGAGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090:ENSGALT00000034191:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(11.9=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACACGAGTCCCAGCTGAA
R:
TGAGCTTCTCTGGTATCCTGCA
Band lengths:
326-1744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]