MmuINT0168762 @ mm10
Intron Retention
Gene
ENSMUSG00000026956 | Uap1l1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:MGI Symbol;Acc:MGI:2443318]
Coordinates
chr2:25362663-25363384:-
Coord C1 exon
chr2:25363244-25363384
Coord A exon
chr2:25362849-25363243
Coord C2 exon
chr2:25362663-25362848
Length
395 bp
Sequences
Splice sites
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
3' ss Seq
TGAGCCCTTCTTCCCACCAGGAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GGAGTTTGAGCCCTTGCTGAGGCTGCATGTGGCCATGAAGAAGGTCCCATACGTGGATGAGGAGGGAAATCTGGTAAAGCCGCTAAGACCGAATGGGATAAAGATGGAGAAGTTTGTGTTTGATGTGTTCCAGTTTGCTAA
Seq A exon
GTTAGTGGTGGAAGTCACTTATTTTCTCTTCTTCCCCCCCCCCCTCTCTCTGTTCTGGGATGAGCGTAGAGGTCCAGCAGGACAGCAGGGAAGTGACAGCTTGTGAGGAGCAGGTGGGCTGGGGAAAGCTCAGGTCAGGTTTTGGAGTTGCTGGGTGGGTCTGTCCTCTTCCTCTGGACATGTGGTAAGCGAGAGTTGGAGGAGGTTTCCTAGGACCTCAGAGGGAAAGTAAAGGTGCTTTCTGTGCCTTCAGGGACCTAGATCACCAGGTCACTGAACTCGGGAACAAACTCCCAGTTAGGGAAGTGTGGTCTCCCCGCGGCTGTCTGAGCAGGGCAGATGGCTGGCATGTATGTGTGTGTGTGGGGGGGATCATGAGCCCTTCTTCCCACCAG
Seq C2 exon
GAACTTTGTTGCCTTTGAAGTGTGTCGGGAAGAGGAGTTCTCCCCTCTGAAGAATGATGACACAGCCGACAGGGACAACCCCTCCACCTGCAGGAGAGCCTTGCTGGCTCAGCACTACCGCTGGGCTCTGCAGGCCGGAGCCCGCTTCCTGGATGTACACGGGGTCCAGCTTACGGAGCAGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026956:ENSMUST00000102925:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(12.1=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGAGGCTGCATGTGG
R:
TAAGCTGGACCCCGTGTACAT
Band lengths:
302-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types