BtaINT0155885 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90845448-90846440:+
Coord C1 exon
chrX:90845448-90845643
Coord A exon
chrX:90845644-90846365
Coord C2 exon
chrX:90846366-90846440
Length
722 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
AAATCTCTCCACTTCTTTAGCTC
3' ss Score
5.46
Exon sequences
Seq C1 exon
AGACCCCAAGTTTGTGGAGCGGACCTTGCGACTGGCGGGCACTCAACCCCTGGAGGTGCTGGAGGCCGTGCAGCGTAGTCTCGTGCTGCAGCGGCCACAGACCTGGGCTGACTGTGTGACCTGGGCCTGCCACCACTGGCACACGCAGTACTCTAACAATATCCGGCAGCTGCTACACAACTTCCCTCCTGATCAG
Seq A exon
GTAATGCCCACTTGCCAGGTCCACTTGGCAGAATGCTTTTTTTCCGTAATGGGAGCCTGCTGTGAGTTCTCTGGCTCCTCCTGGGGATTATTCCAGCTGTGGCACATGCCCCAAGGTGTGGGGAGTCTCAGAAAAATGATTAAACTTGACCTTTTTTTGCCATCCCCTTTCCTTCTAGCAAGAGACTTTCATTTTTATTTCCCTTACCTGTGAGGTGGGCTGACTCATCCACCTCCTAGGACTGTAGCGATCATAGAGGAGAAATCTTCGAGTTAAGAGCTCAGGAAATCAGTGGGGGTTCAACTCCAAGCACCATTTGCACTTGGGCAAGTCACATAGCTTCTCTCTACTTCAGTTTCCTTGTCAGTAAAGTAGAGGTGGTAATAATTACCTCATGAGGGTTCTTGTGAGGATTTCTTGGTATTTGTTAATATTAACTCAGTACAGTACCTGGCAGGTCATAAGAGTTTGTTAAGCTGTGTCTTGCACAGAGTGAGTGCCAGGAGTTCTTTCAGTAACACCCCTAGTTCACCCTGGCATCAGAACTTCCATTCACAGGACCCTTACAGTCTGGGTTATTCATGATTGACTCTATCCCCTGCCATGCATGCCCAGCCAGGGCTAGTGAATAGGGCATACCCAAGGCCCAGGTGAGAAGTTAGGATTGCTGGAGAGGCTCCAGTTTTAGATCCTGCTCCTCAAAAATCTCTCCACTTCTTTAG
Seq C2 exon
CTCACAAGCTCAGGAGCTCCATTCTGGTCTGGGCCCAAACGCTGTCCACACCCACTCACCTTTGATGTCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(7.4=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCCAAGTTTGTGGAGC
R:
TTGCTGACATCAAAGGTGAGTGG
Band lengths:
270-992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]