DreINT0170301 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20731669-20732544:+
Coord C1 exon
chr23:20731669-20731864
Coord A exon
chr23:20731865-20732469
Coord C2 exon
chr23:20732470-20732544
Length
605 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTACACTTTTCCGTTCTAGCTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
AGACTCAAAGTTTATGGAGCGCACACTGAAGCTCCCTGGAGCTCAGCCGCTGGAGGTGGTGGAATCGGTTTACAAGAGTCTGGTGACAGACAGGCCACGCAACTGGGATGACTGTGTAACCTGGGCCCGCAACCACTGGCAGTGTCAATATAACAATAACATCCGTCAGCTGCTGCACAATTTCCCCCCAGACCAG
Seq A exon
GTGAGGCCTGTCTGTCTCATTTGATCAGCTTCGAATGTACTGAATTTTTAAGGTTCAAATTTTAGAAATGCTATAACATGACAATTTTTTATTTTTAACTTATTTAACTACTTTAATAAGATATATTTATATATAATAAGATATTTATGCACACAGAGAAATGTAAAAATTCTCAATAAATGAATTTCTTGAAGGAAAAAAATTAGATGGCAAAATGTTTTACTTTGCCTATTCTAAAATTAAGTCATATCCAAGTCAGACTTTAATTTGTTTCTGAAATCGATTTGTACCCATAAAGTAAGCTGTAGTGTTTCTAGATGGTTTACATGGCATTTTAGATTAAATTGCATTAGTGTATACAGACAGTAGGAAACAAGTTAAAGGATGGAGATTTATTTATTGAATGTGTTGAAGCAGATCTAAATTTCAGCTAATTTAAGGAAAAATGTAGGATTTAAAAAGAGAATGTCATGCATTGCCCAAGAGAAGTCTAAAGTTTTACCTGAAAGTTGCTAATAAAAAAAATCATTTCTTGTAAATATGTATTTCATGTGTATGTGGTCATCTTTAAAAACAGTTTAATATCTTACACTTTTCCGTTCTAG
Seq C2 exon
CTTACAAGCTCTGGGGCGCCATTCTGGTCAGGTCCAAAGAGATGTCCTCATCCATTAGAATTCAGCACTAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(7.4=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCAAAGTTTATGGAGCGCA
R:
TTGTTAGTGCTGAATTCTAATGGATG
Band lengths:
270-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]