GgaINT0022378 @ galGal3
Intron Retention
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2267574-2267901:-
Coord C1 exon
chr12:2267724-2267901
Coord A exon
chr12:2267649-2267723
Coord C2 exon
chr12:2267574-2267648
Length
75 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
CTCGGCTTTCCCTGCGGCAGGAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GGAGCTGCCCGAGGAGCTGCCGCGGTGGGAAGGGCTGGTGGTGCCCGAGCAGGTGCGGAGGAGCCTGCAGGAGCGGCCGCGGGACTGGGGGGACTGCGTGCGCTGGGCCCGCCGGCACTGGCAGCTCCGCTACCACAACAGCATCGCGCAGCTGCTGCACGACGTGCCGCCCTCGCAT
Seq A exon
GTGAGCACGGTCCCCCCTTGTGCCCCCTTTGCTGGAGAGGCGTCCCCAGCCCTGACTCGGCTTTCCCTGCGGCAG
Seq C2 exon
GAATCCAGCCCCGGTGTGCCCTTCTGGTCGGGGGACAGGAGGTGTCCCCACCCACTGACGTTCGACATCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(7.1=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGAGCCTGCAGGAG
R:
CGTCAGTGGGTGGGGACA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]