MmuINT0168878 @ mm9
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107881875-107882168:+
Coord C1 exon
chr9:107881875-107882022
Coord A exon
chr9:107882023-107882093
Coord C2 exon
chr9:107882094-107882168
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
AACGGCCTTTATTTCCATAGGTG
3' ss Score
10.54
Exon sequences
Seq C1 exon
GACATGCACTTCCCTGTCGGCCACGGATAGGACAGAGACACTGGCCTTACTGCAGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAA
Seq A exon
GTAGGTAGTCAGAGGCTGGGCAGCTGATGGCTCCAGGCGACCAGACAGCCCAACGGCCTTTATTTCCATAG
Seq C2 exon
GTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-Uba7:NM_023738:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(11.9=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTACTGCAGCAAGTGAT
R:
GGGTCAAACTGCAAGGGATGT
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: