HsaINT0176108 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49809390-49809725:-
Coord C1 exon
chr3:49809542-49809725
Coord A exon
chr3:49809465-49809541
Coord C2 exon
chr3:49809390-49809464
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAAGTGTGT
5' ss Score
2.99
3' ss Seq
GCTTCTACTTACCTACCTAGGTG
3' ss Score
8.15
Exon sequences
Seq C1 exon
GGCACACACTTCCCTGGCAGACATGGATGAGCCACAGACACTCACCTTACTGAAGCCAGTGCTTGGGGTCCTGAGAGTGCGTCCACAGAACTGGCAAGACTGTGTGGCGTGGGCTCTTGGCCACTGGAAACTCTGCTTTCATTATGGCATCAAACAGCTGCTGAGGCACTTCCCACCTAATAAA
Seq A exon
GTGTGTGGCTAGGGGTTGGGACGCTGGGGGCTCAGGGGGACCAGACTGAGCCCAGCAGCTTCTACTTACCTACCTAG
Seq C2 exon
GTGCTTGAGGATGGAACTCCCTTCTGGTCAGGTCCCAAACAGTGTCCCCAGCCCTTGGAGTTTGACACCAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(7.8=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTGCGTCCACAGAACTG
R:
TTGGTGTCAAACTCCAAGGGC
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains