BtaINT0155988 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50996505-50996839:+
Coord C1 exon
chr22:50996505-50996688
Coord A exon
chr22:50996689-50996764
Coord C2 exon
chr22:50996765-50996839
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
3' ss Seq
CAGCCTCTGTGTTTCCCTAGGTG
3' ss Score
11.52
Exon sequences
Seq C1 exon
GGCACTCTCGTCTCCAGAAGACTTGGTTAAGTCACAGAAGCAGCCCCTGCTGCAGACAATGCGGGGTGTCCTGACAGAGCGTCCGCAGACCTGGCAAGACTGCGTGCTGTGGGCCTTTGGCCACTGGCAGCTCCGCTTCCATTATGGCATCACACAGCTGCTGAGGACCTACCCACCTGACAAA
Seq A exon
GTGGGTGGCTGGGGGTCAGGAGGCTGAGGGCTTGGGGGCAACTGGACTGAGCCCAGCAGCCTCTGTGTTTCCCTAG
Seq C2 exon
GTGCAGGAGGATGGAACTCCATTCTGGTCGGGTCCCAAACAGTGTCCCCAGCCCTTGAAGTTTGATGCCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(10.4=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTCACAGAAGCAGCCCCT
R:
GGAGTTCCATCCTCCTGCAC
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]