RnoINT0159028 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116758026-116758504:+
Coord C1 exon
chr8:116758026-116758090
Coord A exon
chr8:116758091-116758429
Coord C2 exon
chr8:116758430-116758504
Length
339 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
AATGGCCTTTATTTCCTCAGGTG
3' ss Score
10.13
Exon sequences
Seq C1 exon
TGGGCCCAGGACGAATTTGAGGGGCTCTTCAGACTATCCGCAGAGACCATCAACGACTACCAACA
Seq A exon
GTAAGGCCAACAATGGAAGTAGGTAGGAGTCCAGGACTCCAGGCACAGAGTTCAGCCTCAAACTTCCTCTTCCCTCTGCAGGACATGCACTTCCTCCCTGTTGGGCACCGATGGGACTGGAATATTGGCCTTACTGCAGCAAGTGATGGGCGTCCTAAGAACTCGGCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCGTGATAACATCGTGGAGCTGCTGAGAAAATTCCCATCTGATAAAGTAGGTAGTCAGATGCTGGGCAGCCGATGGCTCCAAGAGACCAGACAGCCTAATGGCCTTTATTTCCTCAG
Seq C2 exon
GTGCTTGAGGACGGAACTCTGTTCTGGTCAGGATCCAAAAAGTGCCCACATCCCTTGCAATTTGATCCCAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(22.2=45.5)
A:
NA
C2:
PF0213416=UBACT=PU(12.5=20.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]