BtaINT0155987 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50996349-50996688:+
Coord C1 exon
chr22:50996349-50996413
Coord A exon
chr22:50996414-50996504
Coord C2 exon
chr22:50996505-50996688
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
GCTTTCCCAACCGTCCACAGGGC
3' ss Score
9.15
Exon sequences
Seq C1 exon
TGGGCCAAGGGTGAATTTGACGACCTTTTCTGTGAGTCTGCCAAGACCATCAACAGCCACCCACA
Seq A exon
GTAAGACCCCCGACAAGGGCGAATGGGAGTCCAGGGTCCCTAAGACCAGGAGCCTCAGGGCTTAGCCTCAAGCTTTCCCAACCGTCCACAG
Seq C2 exon
GGCACTCTCGTCTCCAGAAGACTTGGTTAAGTCACAGAAGCAGCCCCTGCTGCAGACAATGCGGGGTGTCCTGACAGAGCGTCCGCAGACCTGGCAAGACTGCGTGCTGTGGGCCTTTGGCCACTGGCAGCTCCGCTTCCATTATGGCATCACACAGCTGCTGAGGACCTACCCACCTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(21.3=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAAGACCATCAACAGC
R:
GTGATGCCATAATGGAAGCGGA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]