HsaINT0176107 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49809542-49809879:-
Coord C1 exon
chr3:49809815-49809879
Coord A exon
chr3:49809726-49809814
Coord C2 exon
chr3:49809542-49809725
Length
89 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
ACTTCCTCCTCTCTCTGCAGGGC
3' ss Score
13.4
Exon sequences
Seq C1 exon
TGGGCCCGGCATGAGTTTGAAGAACTCTTCCGACTGTCTGCAGAGACCATCAACCACCACCAACA
Seq A exon
GTAAGGCCACCAACAGAGGCAGATGGGAGTCCAGGGCTCCAAGCATGAGTCTGCAGGACTCAGTCTCACACTTCCTCCTCTCTCTGCAG
Seq C2 exon
GGCACACACTTCCCTGGCAGACATGGATGAGCCACAGACACTCACCTTACTGAAGCCAGTGCTTGGGGTCCTGAGAGTGCGTCCACAGAACTGGCAAGACTGTGTGGCGTGGGCTCTTGGCCACTGGAAACTCTGCTTTCATTATGGCATCAAACAGCTGCTGAGGCACTTCCCACCTAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(20.8=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGACCATCAACCACC
R:
AAAGCAGAGTTTCCAGTGGCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains