DreINT0170300 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20731519-20731864:+
Coord C1 exon
chr23:20731519-20731583
Coord A exon
chr23:20731584-20731668
Coord C2 exon
chr23:20731669-20731864
Length
85 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGC
5' ss Score
7.1
3' ss Seq
TGTTCCGATCCTTCCCCCAGAGA
3' ss Score
9.66
Exon sequences
Seq C1 exon
TGGGCTCGTGATGAGTTTGAGGGACTGTTCAAGCAACCTGCTGAAAACGCCTTGCAGTATCTGAC
Seq A exon
GTAAGCTCATGTCACCCTAAAAAAAAAACCTGTAAAATTGGAGCTGTTGTCGCTTTAAAATGTGATGTTCCGATCCTTCCCCCAG
Seq C2 exon
AGACTCAAAGTTTATGGAGCGCACACTGAAGCTCCCTGGAGCTCAGCCGCTGGAGGTGGTGGAATCGGTTTACAAGAGTCTGGTGACAGACAGGCCACGCAACTGGGATGACTGTGTAACCTGGGCCCGCAACCACTGGCAGTGTCAATATAACAATAACATCCGTCAGCTGCTGCACAATTTCCCCCCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(22.2=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTGTTCAAGCAACCTG
R:
GCCCAGGTTACACAGTCATCC
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]