RnoINT0158926 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1727104-1727600:-
Coord C1 exon
chrX:1727536-1727600
Coord A exon
chrX:1727300-1727535
Coord C2 exon
chrX:1727104-1727299
Length
236 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCCCCTCTGCTCCCTAACAGAGA
3' ss Score
9.75
Exon sequences
Seq C1 exon
TGGGCCCGGGATGAATTTGAAGGCCTTTTCAAGCAGCCAGCAGAAAATGTTAATCAGTACCTCAC
Seq A exon
GTGAGTAACTTCCACACCCCACCCTCTTGCCTGCCACCAAAGACATTCTCTGCTTTCTTCAGCTGTTACCCCTCAATGCTAGGTGTACACTTTTCAAAGGATGCTAAATGTTCAGTGTTCAAGCTGTTATGGAATCAAGATGAGGAGCTTTCTGTGGAGAAAGTGGGATTGCCCTGGAGCCTGGTTCAGTGGCCACTATATAATCTTGCCCCTTGGCCCCCTCTGCTCCCTAACAG
Seq C2 exon
AGACTCCAAATTTGTGGAGCGGACATTGCGGCTGGCGGGTACCCAGCCATTGGAGGTGCTGGAGGCTGTGCAGCGCAGCCTGGTGCTGCAGCGACCACAGACTTGGGGCGACTGTGTGACCTGGGCCTGCCACCACTGGCACACCCAGTACTGTAACAACATACGGCAGCTGCTGCACAACTTTCCTCCCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(22.2=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCCGGGATGAATTTGAAG
R:
CTGGTCGGGAGGAAAGTTGTG
Band lengths:
260-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]