BtaINT0155884 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90845140-90845643:+
Coord C1 exon
chrX:90845140-90845204
Coord A exon
chrX:90845205-90845447
Coord C2 exon
chrX:90845448-90845643
Length
243 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
ACTCCCCCAATTCCTGATAGAGA
3' ss Score
4.79
Exon sequences
Seq C1 exon
TGGGCTAGAGATGAGTTCGAAGGCCTCTTCAAGCAGCCGGCAGAAAACGTCAACCAATACCTCAC
Seq A exon
GTAAGTAACCAAATGTCCCCTCAGCCCACCCCCTGCCTGCCAGTCAAGGCATCCTGGCTGCTTTCCTCATTGCTGTGACACCCAGCACAGGCACACTTCTCAAATGAATCTGTGAATGAAGCTTGAGCCTCATTCCATTGGCGGTCAGGATTAGCTTTCTCTGGAGAAAGTGAGGTTGCCCTGGAGCCCACTCCTGAGGCCGCTGTGTAATCCTGCCCCTTTGACTCCCCCAATTCCTGATAG
Seq C2 exon
AGACCCCAAGTTTGTGGAGCGGACCTTGCGACTGGCGGGCACTCAACCCCTGGAGGTGCTGGAGGCCGTGCAGCGTAGTCTCGTGCTGCAGCGGCCACAGACCTGGGCTGACTGTGTGACCTGGGCCTGCCACCACTGGCACACGCAGTACTCTAACAATATCCGGCAGCTGCTACACAACTTCCCTCCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(22.2=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTAGAGATGAGTTCGAAGG
R:
CTGATCAGGAGGGAAGTTGTGT
Band lengths:
260-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]