MmuINT0168773 @ mm10
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20678199-20678784:+
Coord C1 exon
chrX:20678199-20678263
Coord A exon
chrX:20678264-20678588
Coord C2 exon
chrX:20678589-20678784
Length
325 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCCCCTCTACTCCCTAACAGAGA
3' ss Score
8.62
Exon sequences
Seq C1 exon
TGGGCCCGGGATGAATTTGAAGGCCTTTTCAAGCAGCCAGCAGAAAATGTTAATCAGTACCTCAC
Seq A exon
GTGAGTAACTTCCACATCTTACCCTTCTGCTTGCCACCAAAGACATTCAGCTGTCATCCTCAATGCTAGGTGCACACTTTTCAAAGGACACTAAATGTTTAGTTCTCATGCTGTTGGGGGATCAAGATGAGGAGCTTTCTGTGGAGAAAGTGGGATTGCCCTGGAGCCTAGTTCAGTGGCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATACATATACATATATATATACACTCTTGCCTCTTGGCCCCCTCTACTCCCTAACAG
Seq C2 exon
AGACTCCAAATTTGTGGAGCGGACATTGCGGCTGGCTGGTACCCAGCCATTGGAGGTGCTGGAGGCTGTGCAGCGCAGCCTGGTGTTGCAGCGACCACAGACTTGGGGAGACTGTGTGACCTGGGCCTGCCACCACTGGCACACCCAGTACTGTAACAACATCCGGCAACTGCTGCACAACTTTCCTCCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924:ENSMUST00000089217:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105854=UBA_e1_thiolCys=PD(22.2=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCGGGATGAATTTGAAGG
R:
CAGGAGGAAAGTTGTGCAGCA
Band lengths:
254-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types