BtaINT0155890 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90848269-90848681:+
Coord C1 exon
chrX:90848269-90848361
Coord A exon
chrX:90848362-90848489
Coord C2 exon
chrX:90848490-90848681
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GATCCTTTGCTGCCTCACAGAGC
3' ss Score
8.52
Exon sequences
Seq C1 exon
GATGATGACACCAACTTCCATATGGATTTCATCGTGGCCGCATCCAACCTCCGGGCAGAGAACTATGACATTCCCCCTGCAGACCGGCACAAG
Seq A exon
GTGAGGCAAACCCAGACCCAACGTTCCACCCCCTCCCGGGCTGGATTTGCCCACATTTCATCCCTTCTTTAGACTCAGCCTCTTCTACTCTCAACTTCCATCTTCCTTGATCCTTTGCTGCCTCACAG
Seq C2 exon
AGCAAGCTGATTGCAGGAAAGATCATCCCAGCCATTGCCACAACCACAGCAGCCGTGGTTGGCCTTGTGTGTTTAGAGCTGTACAAGGTGGTGCAGGGGCACCGACAGCTCAACTCCTACAAGAATGGTTTCCTTAACTTGGCCCTGCCCTTTTTTGGCTTCTCCGAGCCCCTCGCAGCACCTCGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGATTTCATCGTGGCCGC
R:
GAGGGGCTCGGAGAAGCC
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]