GgaINT0022382 @ galGal3
Intron Retention
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2266641-2266966:-
Coord C1 exon
chr12:2266880-2266966
Coord A exon
chr12:2266815-2266879
Coord C2 exon
chr12:2266641-2266814
Length
65 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GATGCCCCTTCTGTCCTCAGAGC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GACGATGACCTCCACTTGAGCTTCATCACAGCTGCATCCAATCTGCGCGCAGAGAACTACAGCATCCCGCCTGCCGACCGGCTGACG
Seq A exon
GTGAGTGCCGTCCCCGAGGGTCCCCCTCCCCACAGGGCGGCTGGTGATGCCCCTTCTGTCCTCAG
Seq C2 exon
AGCCAGCGCATCGCTGGGCGCATTGTGCCCGCCATCATCACCACCACAGCGGCCGTGGCTGCCCTGGCGTGCCTGGAGGTTTACAAGCTGGTGTGGAGATGCCGAGACCTCCGGTGCTACCGCAACAGCAACTTGTTCCTGTCTGAGTGCCTGTTGTTCCGCATCCAGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(41.8=100)
A:
NA
C2:
PF0213416=UBACT=PD(49.3=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGACCTCCACTTGAGCT
R:
CCAGCTTGTAAACCTCCAGGC
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]