HsaINT0176113 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49845169-49845545:-
Coord C1 exon
chr3:49845453-49845545
Coord A exon
chr3:49845361-49845452
Coord C2 exon
chr3:49845169-49845360
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AAATCTCTTGTCCTTGGCAGAGC
3' ss Score
6.68
Exon sequences
Seq C1 exon
GATGATGACAGCAACTTCCATGTGGACTTTGTGGTAGCGGCAGCTAGCCTGAGATGTCAGAACTACGGGATTCCACCGGTCAACCGTGCCCAG
Seq A exon
GTAACCCCACCCCTTGAGGCTTGGGCCTGGAGGTGGAGGGCAAACCCTGGCCCTACGCCTTGGGCCCAGACCAAATCTCTTGTCCTTGGCAG
Seq C2 exon
AGCAAGCGAATTGTGGGCCAGATTATCCCAGCCATTGCCACCACTACAGCAGCTGTGGCAGGCCTGTTGGGCCTGGAGCTGTATAAGGTGGTGAGTGGGCCACGGCCTCGTAGTGCCTTTCGCCACAGCTACCTACATCTGGCTGAAAACTACCTCATCCGCTATATGCCTTTTGCCCCAGCCATCCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTACGGGATTCCACCG
R:
GTAGGTAGCTGTGGCGAAAGG
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)