BtaINT0155993 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50998123-50998499:+
Coord C1 exon
chr22:50998123-50998215
Coord A exon
chr22:50998216-50998307
Coord C2 exon
chr22:50998308-50998499
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AGATCTCTTGTCCTTGGCAGACC
3' ss Score
7.09
Exon sequences
Seq C1 exon
GACAATGACAGCAACTTCCACGTGGATTTTGTGGTGGCAGCGGCCAGCCTGAGAGCTCAGAACTATGGGATCCCAGTGGCCAGCCACGCTGAG
Seq A exon
GTAACCTGCCCCTTGGGGCTCAGGCCTGGAGGTGGTGGGTCAAACCCTAGCCTTAGGCCTTGGGCCCAGATCAGATCTCTTGTCCTTGGCAG
Seq C2 exon
ACCAAGCGAATTGTGGGCCGGATTATCCCAGCCGTTGTCACCACTACAGCGGCCGTGGCTGGCCTGGTGGGCCTGGAGCTGTACAAGGTGGTGGGTGGACCACGGCCCCGCCATGCCTTTCGCCACAGCTATCTGCACCTGGCTGAAAACTACTTTAGCCGCTGGGTACCTAAGGCCCCAGACATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(19.7=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAACTTCCACGTGGAT
R:
CACCACCTTGTACAGCTCCAG
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]