RnoINT0159032 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116760029-116760406:+
Coord C1 exon
chr8:116760029-116760121
Coord A exon
chr8:116760122-116760214
Coord C2 exon
chr8:116760215-116760406
Length
93 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACT
5' ss Score
5.86
3' ss Seq
AAGTGCCCTGTCCTTGACAGATC
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATGACAGCAGCAACTTCCACGAGGACTTTGTAGTAGCAGCGACAGACCTGCGCTGTCAGAACTATGGGATCCTGCCAGTTAACCGTGCTCGG
Seq A exon
GTAACTTCACCCTTCTGGGGCTCCGGCCTAGAAGTGAGAGCCAAATCTTGTCCCTGAACCTTGATCCCAGACCAAGTGCCCTGTCCTTGACAG
Seq C2 exon
ATCAAGCAAACCATCGGCCGGATTATCCCAGCCATTGCCACCAGTACAGCAGTTGTGGCGGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGTGGGCCACGGCCCCTTGGCACCTTTCGGCACAGCTACCTGCACCTGGCTGAAAACCACTTCATACGCTCAGCACCTTCTGCCCCGGCCATGCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGCCAGTTAACCGTG
R:
GTTTTCAGCCAGGTGCAGGTA
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]