RnoINT0158932 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1724328-1724734:-
Coord C1 exon
chrX:1724642-1724734
Coord A exon
chrX:1724520-1724641
Coord C2 exon
chrX:1724328-1724519
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
TTCCTTGGTCTATTTCTCAGAGC
3' ss Score
7.6
Exon sequences
Seq C1 exon
GACGATGACAGCAATTTCCACATGGATTTCATTGTGGCTGCATCTAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGGCACAAG
Seq A exon
GTCAGGAGACTTTAAGCCTGATGTTCTATCTACTCTCGGGCTTGAGTTCCATATACCCCATCCTCTTCTGTAGACCTTCAGTCTCTTATAAATTATAGCATCTTCCTTGGTCTATTTCTCAG
Seq C2 exon
AGCAAGCTGATCGCAGGGAAGATCATCCCAGCTATCGCCACAACCACAGCTGCTGTGGTTGGCCTTGTGTGTCTGGAACTCTACAAGGTAGTTCAGGGGCACCAACAACTTGATTCCTACAAAAATGGTTTCCTGAATTTGGCCCTGCCCTTCTTTGGGTTTTCGGAACCTCTTGCTGCGCCTCGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATTTCATTGTGGCTGCA
R:
GCAGCAAGAGGTTCCGAAAAC
Band lengths:
252-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]