BtaINT0155896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90836874-90838044:+
Coord C1 exon
chrX:90836874-90837008
Coord A exon
chrX:90837009-90837937
Coord C2 exon
chrX:90837938-90838044
Length
929 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GAGCTTCCACCTCTCCACAGGTG
3' ss Score
10.56
Exon sequences
Seq C1 exon
TTCTACCTGCGGGAAGAAGACATAGGAAAAAACCGAGCTGAGGTCTCCCAGCCCCGTCTCGCTGAGCTCAACAGCTATGTGCCTGTCAGTGCCTACACCGGGCCCCTTGTGGAGGACTTTCTCAGTGACTTCCAG
Seq A exon
GTACCATAGGCCTCATGCCCAGTTCTCTCAGAGCCTAGCTCTGGTTTATTCTTTTGATAAACATTTAATGGGCTAGCCTGTGAGTCAGGTTTCCCGCTAACGCTGCAGCAAGGAAATGCGAGCAGGCTTTAGGCCCTGGGCCTGCCTCTTTAGGAGGAATATTGTAAGCCAACAGGTGGGAAGGCATAGTGGTTATGTGCAGAGACTGAAGCCAAACTGCCTTGGCACGAGTCTCTCATTGTACTTGCATAATGTCGGGCCAGTAATGGAGTCTCCTGTTCCTGCCTTTGTCTGTCTGCAGACATGGGAATGGTAGTAATGCTGACTTGATAAAGGTTTTGTGAGGGCTATGGACTAGCAGCTGGTTGTTGGTTAAATAAAACTCTGGGCCAGAAAGAGGAGTTGTGGGAGCTGAAATTCTGCCCCAGGGTGTCCCTGCGAGCCAGGACACTGCTGCTGAACCCTGCTGTAGCCGTGGGAGCTCACCCTGATGGGAGTGGGTAGGCATTCAGCAGAGACTCATGGCTGAGCAGGTGTTTTAAGAGTTGGGAGCAAGTGGGTGTGGTAGGAGTGAGCTCAGACTTTGGCTAAGGACAAAGTTTTACTTCTGTGTCTCCCAGGGCATGGCAGGGCTGTAAACAGGCAGCAGTGGGTGTTGGCAAATGAAGGAGTCAGCTGTTATCCAGACTCTGTCCTCCCAGTTGCCTCTTTACCTTGCCTGCCATAGTCTAGGGATTCACATTTCCTTTCATTGAGTTTTGCTTGGGCTGAATCTGATACGTGGTAGATACTTTCTGTTTGTGATAGAGAGCTGAACCAGCAAAGCCTTAAGGACCCCGTGAGCCCTCCTATCAGCCCTCCTCTATGATTGCTCCCTTTACCCTTCACCCTGGTGCTGGGCCCTTGCCTGAGCTTCCACCTCTCCACAG
Seq C2 exon
GTGGTGGTCCTCACTAACAGCCCCCTGGAGGACCAGCTGCGGGTAGGTGAGTTCTGTCACAGCCATGGCATCAAGCTGGTGGTGGCAGACACCCGGGGCCTGTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(33.3=100)
A:
NA
C2:
PF0089916=ThiF=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCTGCGGGAAGAAGACA
R:
GAACAGGCCCCGGGTGTC
Band lengths:
239-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]