GgaINT0022365 @ galGal4
Intron Retention
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2433637-2433942:-
Coord C1 exon
chr12:2433808-2433942
Coord A exon
chr12:2433744-2433807
Coord C2 exon
chr12:2433637-2433743
Length
64 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCACTGACAGCCCTGCGCAGGTG
3' ss Score
0.86
Exon sequences
Seq C1 exon
TTCCTCCAGGGGGAGCGCGGTGTGGGCCGGAACCGTGCTGAGGTGTCCCAGCAGCTGCTGGCCGCACTGAACCCTGATGTGGAGGTGTCGGTGCACCCCGGGGAGCTGTCGGAGGAGTTCCTCGCTGCATTCCAG
Seq A exon
GTGAGTCTGGCCCCCAGCCCAGGAGTGCCGTGGGGCTCCAGTGCCCACTGACAGCCCTGCGCAG
Seq C2 exon
GTGGTGCTGCTGACCGAGTCCCCGCTGGAGGAGCAACTCCGTATCGGGGACATCTGCCATGCCAAGGGTATCTGCTTCATCGTGGCCGATGCCAAAGGGCTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(34.1=100)
A:
NA
C2:
PF0089916=ThiF=FE(27.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCTGATGTGGAGGTGT
R:
CAGATACCCTTGGCATGGCAG
Band lengths:
142-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]