HsaINT0176117 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49813062-49813383:-
Coord C1 exon
chr3:49813249-49813383
Coord A exon
chr3:49813169-49813248
Coord C2 exon
chr3:49813062-49813168
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGATCACTGTGTCCACCCAGGTG
3' ss Score
8.73
Exon sequences
Seq C1 exon
TTTCTCCTCTCAGAGCAGGACTTGGAAAGGAGCAGAGCCGAGGCCTCTCAAGAGCTCTTGGCTCAGCTCAACAGAGCTGTCCAGGTCGTCGTGCACACGGGTGACATCACTGAGGACCTGCTGTTGGACTTCCAG
Seq A exon
GTCAGCTCAGGCCTGCAGCCCTCAAGAGCAGGAAGGGCTGGGCAATGGTTTTGGCCCTGCTGATCACTGTGTCCACCCAG
Seq C2 exon
GTGGTGGTGCTGACTGCTGCAAAGCTGGAGGAGCAGCTGAAGGTGGGCACCTTGTGTCATAAGCATGGAGTTTGCTTTCTGGCGGCTGACACCCGGGGCCTCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(33.3=100)
A:
NA
C2:
PF0089916=ThiF=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGAAAGGAGCAGAGCC
R:
GCTTATGACACAAGGTGCCCA
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains