RnoINT0159037 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116754717-116755061:+
Coord C1 exon
chr8:116754717-116754851
Coord A exon
chr8:116754852-116754954
Coord C2 exon
chr8:116754955-116755061
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TGATCATGGCGTCCATCTAGGTA
3' ss Score
7.76
Exon sequences
Seq C1 exon
TTTTTCCTCTCAGAAGAGAGCTTGGGAAGGAGCAGGGCTGAGGCCTCTCAACCACAATTGGCCCAGCTTAATGAAGCTGTCCAGATCTCCGTCCACAGAGGCGACATCACTGAGGACCTAGTGCGGGGTTTTCAG
Seq A exon
GTGCTTACCCCAGTGCCATTTTGCATGCTAGCCTAGTACCTCCCTACTGTCCTTAATGGCAGAGAAAGTGATTCTGAGCCTGCTGATCATGGCGTCCATCTAG
Seq C2 exon
GTAGTGGTGCTGACTGACTCCAAGCTAGAGGACCAGCTGAATATGGGAGCCTTGTGCCATAAGAATAGAGTCTACTTCCTCATGGCTGAAACCCGGGGCCTTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(33.3=100)
A:
NA
C2:
PF0089916=ThiF=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAAGAGAGCTTGGGAAGG
R:
CCACAAGGCCCCGGGTTT
Band lengths:
234-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]