MmuINT0168887 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107976055-107976412:+
Coord C1 exon
chr9:107976055-107976189
Coord A exon
chr9:107976190-107976305
Coord C2 exon
chr9:107976306-107976412
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
CAATCACGGTGTCCATCTAGGTA
3' ss Score
7.44
Exon sequences
Seq C1 exon
TGTTTCCTTTCAGAAGAGAGCTTGGGAAGGAACAGGGCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAATGAAGCTGTCCAGATCTCCGTCCACAGTGGCGACATCACTGAGGACCTACTGCAGGGTTTTCAG
Seq A exon
GTGCTTTCCCCAGAGCCACTTTGCATGCTAGCCTAGTACCTCCCTCCTGCCCTTAACGGCAGAGAGAAGGTGGCGAGTGATTCCGGGCCTGCTGATCAATCACGGTGTCCATCTAG
Seq C2 exon
GTAGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACCTTTGTGTCACAAGCATGGAGTCCGCTTCCTGATGGCTGAAACCCGGGGCCTTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(33.3=100)
A:
NA
C2:
PF0089916=ThiF=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTCAGAAGAGAGCTTGGGA
R:
CACAAGGCCCCGGGTTTC
Band lengths:
236-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types