RnoINT0158938 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1735196-1736448:-
Coord C1 exon
chrX:1736314-1736448
Coord A exon
chrX:1735303-1736313
Coord C2 exon
chrX:1735196-1735302
Length
1011 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TGAACTCTATTTCTCCACAGGTG
3' ss Score
11.05
Exon sequences
Seq C1 exon
TTTTACCTTCGGGAGGAGGACATTGGTAAAAATCGAGCTGAGGTATCCCAGCCCCGACTTGCTGAACTCAACAGCTATGTACCTGTTACTGCCTACACTGGGCCTCTTGTTGAAGACTTCCTTAGTGGTTTCCAG
Seq A exon
GTACTTGGTGATTGCTCAGCCTCCTGCTTGATTTTCATAGAAAGAACTCGTGTTTTGTATTGTTGGCACTATTCACTAGTTAATGAGTTGTCTTGGGCATCGAGCAGTATGCATGAGAGCAGAGAAGATGCACAAAAGATGAGACCTTGAGCCTGCCTTTGGGGAAAAGGTGGAGACAGTGTCCTGCTATGAGTGTAACTTTAGGCAGGTCACTTAGATCCTGGGCCTTGCTCTTTCCATTTCACAATAGGAATGGCAGCAGAACCGACTTCATGGAGTTCCTATGAGGAATAAGCATGGAAAATAGCAGTGTGGTCACAGGAAGGATGGCACAGGCATTTACTAGTTAAAAAGCCTAGGCTATGAGAGCTGCCTCAGGGGCTAAGGTCCCCAAGGGCTAAGGTACTGTAGCAACAACAATCAAACATAGTAGTAGGAGCTCATCCTGGTGGACAGAAATAGATATTCTTGGAGAAGGTAGAGAGAGCAGTTTTAAAATTGTGATGGAGTAGGCACCATCTTGAGACCCATCAACAGGTAGGTATTATAAGAGTGAGCTCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAAGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAGAGTGAGCTCAGACTTTGACTTCAGTTTCTTCCTGCCTGTGTCTCACAGGGCAGGGCATGGTTGTAGGCAGTTAGCAAACAAATGAGTCAGCTGCAGTCTGTGCCCAGTAGTACCATTCTACCTGGCCCAACGTGTTCTAAGCTTTCGTTTTCTGTCTGCTGTGTTTTCTTCTCATTGAATCTGATCCCCAGAAAGTCTTTAAGAGAGAGGTCTGGAGGACCAGGAGGATAACTGTCTTCAGGACTGCCTCAACCTCTTTGCACTAGTCTCTGCTATTCTTTTTTCTCCCCTTCCTCCTAGTTCTGGCCTCTTGACATGAACTCTATTTCTCCACAG
Seq C2 exon
GTGGTGGTCCTTACCAACAGCCCCCTGGAAGAACAGCTTCGAGTGGGTGAGTTCTGTCATAGCCGTGGCATCAAGCTAGTGGTGGCAGATACAAGAGGCCTATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(33.3=100)
A:
NA
C2:
PF0089916=ThiF=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGGAGGAGGACATTGGT
R:
AGGCCTCTTGTATCTGCCACC
Band lengths:
230-1241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]