BtaINT0155967 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85062720-85064194:-
Coord C1 exon
chr6:85064125-85064194
Coord A exon
chr6:85062792-85064124
Coord C2 exon
chr6:85062720-85062791
Length
1333 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATTACTGTTTTAAAAATCAGGAC
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCACTTCAGTTTTCTTCTAAATGCTGCAAAATTATATGCTACAATCTATTGCATTCCATTTACAGAAGAG
Seq A exon
GTAAGATATTCTTCAAACCCTAACAGATAGAAATAATTAGAATTAGAAGACCTAGCTTAATTGTATCATCAGAACGTGTTTTATAAGAATCATTCTTTGATATAAACTTTTAATTTTGTTGTAGTGTTTCCCTTTCTAATATAGCAGAAGTTAAACACCTCATTGCAGCATTACTAAGTAGAAGAAAGTTGAATTTTTCTTTCTGAATTTAAATAGTGAAACAAATATTTGTAAGAGAAATCTTATCTTTATTTTTAAAATGTTTGTGACCAACATAACTTTAACTATTATAATTACTTTTAAAACCGAAGGTGACCTATATCATAACAAATTTTAAATATTACTTAGTGGTTCTCTTTATTAACATTTGTTTGGTTTATTTTGTGAAATTAACCTATGTGCATCTCAGGAGACCTGAAAATGCTCTCCCATATTAACATTTCTTAACGTTTATCATTTATACATTTTTTCTTAGACATTACCTTCATTGACTAATATATAAAGGATCTAATGCAGTTTTATTTGAAAGGGAGGTCTGTATTAGTGAATCTTCATCCTCAAATGCATAACAGAGCTAAATAACTGGTTATACTTTTAGGTACTAGGCTGAATGGGAGAACATCAGCCAGATTCATAACTAGCACTGGCTCTTTTGAATCTACATAAAAATGTAGATTAATCCCTTTTGGGGTTAAAACACAGTAAAATATACCATAAATGTCTGGTAAAGATAGTGGTATTCAGTTAGTTATTCTTCTTGTGAAAAAAGTGGTAATTTGTGATTAGAGTTGTAGGTGACCTCAAAAGCACTATGTCTCAGTTTTTCCTAAGCAGATTCTTAATAATAAAAACGTATATAGCTTTAAATTCATCTAAGTTTATCTTGAACCATATAAATATTTTCCAGTTTCTGGAGATATGAATTCCATTTACTTATTTATTCATTTGTTTATTGAGTCACCGTATATTGAGTAAAACTTTCTGCAGGGAACTTTGTAAAACATTGAAGAGATAGTTCCTGATCTCAGAGGGCACTCTGTGTGATACTCACAAGCAGTCCTAAAACTAACTTTTTAAGAATTTGTGGAAAGACTAAGATTTTGGTCAACTAATATGTTGACTATTAAGTACTTTTCTACATGCACCACCCGCACCTCCCAGCCTTTATGGATGATATTTCTATAGAAATAAAAGTAAATGTCACAAACAGATGTGGTCTAAACAGTTATAAATTACTCAAATATTTTATCATGTTAAAGTACCATTTTTTGGTTGTGTTTAGAATTTAGAATTTTAAGAATATGCTGATAAAAATTACTGTTTTAAAAATCAG
Seq C2 exon
GACTTATCAGCAGATACCCTGTTGAATATTCTTTCTGAAGTAAAGATTCAGGAATTCAAACCATCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837:ENSBTAT00000008985:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(46.9=100)
A:
NA
C2:
PF0213416=UBACT=PD(34.7=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]