GgaINT0070361 @ galGal3
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53137213-53138517:-
Coord C1 exon
chr4:53138448-53138517
Coord A exon
chr4:53137285-53138447
Coord C2 exon
chr4:53137213-53137284
Length
1163 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TCTCTTCAAAACAATAATAGGAT
3' ss Score
4.26
Exon sequences
Seq C1 exon
GCACTATGATTTCATTGTGAGCGCAGCAAAACTCTTCGCTACAGTGTACTGTGTTCCTTTCACAGAACAG
Seq A exon
GTAATCGATACTGCAGTAGTGTTCTTATTTCATAACCTGGGTATATAGGCATACAATTCTGATCCAGCATCCAATTTTCCTGTCCTTTCCAAGAACTAATTAAAGTGATTCTTAATCTGTCCTTCAGCATGGATTGTTCAGCAGCTGTTTGTATATATATTCGTCTTGGTTTGTAATTCAAACCAGAAAAATGCATGAGTAGTGAATTAAGTATTTTCAGTTAGCTCTGAAGTCGTAAATCCTTATTTTGGTGGACCATTTCCTATGTAACATAATAACTGCCTTGAAAGATCTTTTTCAGGCATTTTCTAAGTATATTAGGAATCTTGTTGTGGAGTTTTTATTTTAGTTATTGTTTTTACTACTTACAGCCTCTTTGTTGCTTGCCTATCCTTTGTTTTTCATGTTAGACTTTGTCTTTTCTAACTGGATCTTCCTGCAAGTCACGTGTTTACATTTTGCTTCTTATCTCCTGAACTACTTCAAGTCCTCTGCATGAGTAATGCTCCTTTATGTGCAATGAGGAGACCGCAGACAGATCTGTGCATCCAGGTGCTGTGCAGTAAGGCTGATGCCAGGCCTGTCAGACTTGCTGTGCATTGCAGAGCAAAATTCCCAGGAATGCAAAACTGCTCTTCCATTTGTGCTGCAAGCAGCAAAAATCAAAATATAATAAGTATTTATGCTGTCTTGGAGTGTCCCAATTGTCTTCAGTACCCTGTGAACAAAAGACAGCACATACCGTCTAAACATCATTTAAAATTTATTGTTGTTTTAAGCTTGAACATAACTTTTTGATACCTATTTTTACATGCATCCCTATTAGTGCAGCTGTCATGCTGTATTTCATGCATATCTTACAGTTTGTACAAATAAATGTTTTCTATTCATATCGATATGGCTGTGGGAGAAATCTTATTTCTTAGAGGTATAAATTCAGCTCAGTTTGCAAAGTGTGAGGCACTTCATTCCTCTGCAGGTCTTATGCATTTTGAACCTCATCTGAGGTTTCAGTGATGAAGTTTCAGTGAAACACCGCTGTCTGTTTCTGGGATTTTTTTGGATTTGGTATTCTTTTAAATGTTCCTGCATACAGAGCCTCTTTGTAGAGGGCTTTTTCGGTTGATATAAATTGAAATTGTTTCTCTTCAAAACAATAATAG
Seq C2 exon
GATTTGTCAGAAGAAACTATTCTGAAGATAATTTCATCTGTGAAGGTACCAGAGTTCAGACCTTCAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(39.0=100)
A:
NA
C2:
PF0213416=UBACT=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]